Serpula lacrymans: SERLADRAFT_363717
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Entry
SERLADRAFT_363717 CDS
T03135
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sla
Serpula lacrymans
Pathway
sla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SERLADRAFT_363717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sla03019
]
SERLADRAFT_363717
03041 Spliceosome [BR:
sla03041
]
SERLADRAFT_363717
03009 Ribosome biogenesis [BR:
sla03009
]
SERLADRAFT_363717
03016 Transfer RNA biogenesis [BR:
sla03016
]
SERLADRAFT_363717
Enzymes [BR:
sla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SERLADRAFT_363717
Messenger RNA biogenesis [BR:
sla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SERLADRAFT_363717
Spliceosome [BR:
sla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SERLADRAFT_363717
Complex C
U4/U6.U5 tri-SnRNP related factors
SERLADRAFT_363717
Ribosome biogenesis [BR:
sla03009
]
Eukaryotic type
Pre-60S particles
Helicases
SERLADRAFT_363717
Transfer RNA biogenesis [BR:
sla03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SERLADRAFT_363717
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
18810003
NCBI-ProteinID:
XP_007323274
JGI:
363717
UniProt:
F8PAK0
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MDSNDLFGFLDGTELEDADIEDIALENGAEATSKKKRKASSPAERPSGDDEEEYLKNGDP
SSSTSKKTRLASPVPVVVDEFETEAKREVAASAGLTGGVEAGSRLELRHQVRHQVAVPHN
YPYTPISKHVPPSKPAREYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVVAEYAIAQ
CLRDKQRVIYTSPIKALSNQKYREMLAEFGDVGLMTGDVTINPSATCLVMTTEILRSMLY
RGSEIMREVAWVIFDEIHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNAMQFAEWIC
KSHEQPCHVVYTDFRPTPLQHYLFPAGGEGIYLVVNEKGEFREDNFSKAMGVLQERMGED
PADPRSGKGRKGKSRKGGDKKGALQILLTSPSDISKIIKRIMLMNYNPVIVFAFSKRECE
ALALTLSKYEFNTSDEQDLVANIFDNAINNLAPDDRQLPQISNLLPLLKRGVGIHHGGLL
PILKEVIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTAARKFDGREFRDLSSGEYIQM
SGRAGRRGLDDRGVVIMMCDEKLEPTSAKEMVKGEADRLDSAFHLGYNMILNLMKVEGIS
PEFMLERCFFQFQSSAGIPLLEDELKTEEKNKDAIAVPDEALVAVYYNYRQQLDQMATDF
RDVITHPIYSLPFLQPGRLVKVKYQKIDFGWGVIINYQKRLPPKNRPMPQLEELPPHEQY
VIDVLLNCAVGSALSKDNNVTATPGGIQPCPHGQKGVPLVVPVLLSTIDGISHIRLFLPK
DLRQDQARETMWKSVLEVQRRFPDGIALLDPIKNMGINDDKFKALVKKIEVMEQKMFSSP
LHKDPRLPDLYTLYSQKQEAQTKIRALKKRIQTTHDILQLEELKCRKRVLRRLGFTNASD
IVDMKGRVACEISTGDELLLTELIFNGVFNTLSPEQSAGLLSCFVFTEKACLIISISEQV
TKLTEELASPLRVMQEIARRIAKVSQESKLPLVEDEYVQSFKVELMDAVVQWCRGASFSD
ICRLTDQFEGNLIRVFRRLGELLRQMTQAAKVIGNSELQTKLKKASEMLERPNSVIFCSS
LYL
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggactcaaacgacttatttggattcctcgatggaacagaattggaggacgccgatatt
gaagacatcgctttggaaaatggtgcagaggcaacttctaaaaagaaacgcaaggctagt
tcacctgctgagcgtcccagcggagatgacgaagaggaatatctgaagaatggtgaccct
agttcatcgacaagcaagaaaactaggctggcttctccagttcccgtggttgtggatgaa
tttgaaacggaggcgaaaagagaagtagctgcaagtgctggactcactggcggagtcgaa
gcaggctcgagactagagcttagacatcaagttcgccatcaagtggctgtaccccacaac
tatccatacacacccatctcgaagcatgtcccgccttctaaacctgcgagggagtacaaa
tttactctggatcccttccagcaagtttcagtacacgcaatccaaagaaatgagagcgtg
ctggtatcggcacatactagtgcaggcaaaacagttgtagcagaatatgccatagcacag
tgtctccgggataagcagcgtgtaatatacacaagtcctatcaaggcactgagcaatcaa
aagtaccgcgagatgcttgcggagtttggcgatgttggtttgatgacaggggatgtgact
ataaacccttccgcgacatgtctagtcatgacaacagagatcttgcgttctatgctatac
cgtggttccgagataatgcgagaagttgcttgggtaatattcgacgaaatccattacatg
agagacaaggagcgtggcgtggtttgggaagaaactatcatcctgctacctcacagcgtc
cgctacgtttttctctctgccaccattcccaatgccatgcagtttgcagaatggatatgt
aaatcacatgaacagccatgtcacgttgtttacacggacttccggcctactccactacag
cactatctcttccctgctggtggcgagggtatatatctggtggtgaatgagaaaggtgaa
tttcgcgaggataacttcagcaaggcgatgggagtattacaggaaaggatgggcgaagat
ccagccgatcctagaagtggaaaaggtcgaaaaggaaaatcaaggaagggaggcgataaa
aaaggtgcgctgcaaatccttttaacgagcccgtcggacatctcaaaaatcatcaaaagg
attatgcttatgaactacaatcctgtcatcgtattcgctttcagtaaacgcgaatgcgag
gcccttgctctcactctttccaaatatgaattcaacacatccgatgaacaagatctagtc
gcgaatatattcgacaacgctatcaacaatctcgctcctgacgacagacaactaccccaa
atatctaatctcttaccactcttaaaacgaggtgtagggatccatcatggtggcctatta
cccattctaaaagaagtcatcgagattctcttccaagaaggtcttatcaaagttttgttt
gctactgagacattctcaattggtttaaacatgcctgcaaaaaccgttgttttcactgct
gctcgcaaatttgatggtcgcgagttccgtgacttgtcgtcaggcgagtatatccagatg
tctggccgagctggtcgtcgaggtctggatgaccgtggtgttgtcatcatgatgtgcgac
gagaagcttgagccgacttctgcgaaagagatggtcaaaggcgaggccgaccgcttggat
tccgctttccaccttggatacaatatgattctaaatttaatgaaagtggaaggtataagc
cctgagttcatgcttgaacgctgctttttccagttccagagcagtgcaggtataccctta
ctagaggacgaactaaaaactgaagagaagaacaaagatgcaattgcagttcccgatgaa
gcccttgtagcggtttactataactatcgccaacaacttgaccaaatggcaacagatttc
cgcgatgttataacgcatccaatttacagtttgccattcctgcaacctggtcgcttggta
aaagtaaaatatcaaaagattgactttggttggggagtcatcataaattaccagaaacgc
ctacctcccaaaaataggccaatgcctcagctcgaagagcttcctccgcatgaacaatac
gttatagatgtactattgaactgtgctgttgggtcagctctcagcaaagacaataatgtc
accgcaactcctggaggtattcaaccatgtccacatggccaaaaaggtgtccctttagta
gtacctgtgttactttcaaccatcgacggcatatcccacatccggctcttcttaccaaaa
gatctacggcaagatcaggctagagaaacgatgtggaaaagtgttctagaagtacagcgt
aggttcccagatggcatcgccctccttgatcctatcaagaatatgggtatcaatgatgat
aaattcaaggcgctggtgaagaaaatcgaagtaatggagcaaaagatgttttccagccct
ttgcataaagatccccggttaccggacctgtacacactgtattcccaaaaacaagaagca
caaacaaaaatacgtgcgttgaagaaacgtatacaaactacacacgacattcttcagctc
gaggagctcaaatgccgaaagcgtgttctccgacgtcttgggttcacgaacgcatcggac
attgttgacatgaagggaagagtagcatgcgaaatcagcaccggtgacgagttgctgctt
acggagctcatattcaacggcgtcttcaatactctatcaccggaacaaagtgctggtctc
ttgagttgcttcgtgttcacagaaaaggcatgtctgattatcagtataagcgaacaagtt
acaaagcttactgaggagctggcatcaccattgcgggttatgcaagaaattgccagacgc
attgccaaggtctcccaggaatcgaagttgcccctagttgaagatgaatacgtccagtcg
ttcaaggtggaactaatggatgctgtagtacaatggtgtcgcggagcatcattttcagat
atatgcaggttgacggatcaattcgaggggaatttgattcgagtctttcgcagattagga
gagctgcttcgccaaatgactcaagccgccaaggtcataggaaactcagaattgcagacg
aaactaaaaaaagcctctgagatgctagaacgtccaaactctgtcatcttctgttcttcg
ttatatctgtag
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integrated database retrieval system
