Serpula lacrymans: SERLADRAFT_444703
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Entry
SERLADRAFT_444703 CDS
T03135
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sla
Serpula lacrymans
Pathway
sla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SERLADRAFT_444703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sla03019
]
SERLADRAFT_444703
Enzymes [BR:
sla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SERLADRAFT_444703
Messenger RNA biogenesis [BR:
sla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SERLADRAFT_444703
mRNA degradation factors
3'-5' decay
Ski complex
SERLADRAFT_444703
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-GeneID:
18816126
NCBI-ProteinID:
XP_007313003
JGI:
444703
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MEESQDLLISQILQPSKGNSDDLLEKIGLGGIPSREQVYQEIEEKLLLPPSTLPENWLST
YQIHWQREVSVPSLLTYEPSPPPTSLTFVRSGLQGHVTGYAETPNPHVSTGLTSTSMDRA
PGPSKNFVRGKSGHVPFWPGGLEDVISSSGNSSIESAKGLRTVPPGFTRGLRLPGDDFED
EALAQFDEKINAEGIKESDMRTHLRPTKTTRRTRLATIIKRDWAHVVDINKPMTNFRELV
PEMAHEYPFELDTFQKEAVYHLEMGDSVFVAAHTSAGKTVVAEYAIALAEKHMTRAIYTS
PIKALSNQKFRDFKQTFSSSSVGILTGDVQINPEASCLVMTTEILRSMLYKGADLIRDVE
FVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPNTKEFADWVGRTKKKDIYVI
STAQRPVPLEHYIYAGRETFKIVDANRRWISEGYKDAGEALKRKQDKAREAAGLPPVQRV
GARGAAPRGGQRGGTPTRGGQRGATPNNRGAPPGRGGGPSRIIHTGADKNLYVHLLNHLQ
KKTLLPVVVFTFSKKKCEENAGTLTNADLCTSVEKSEIHVAIEKALSRLKGTDKKLPQIS
RMRDLLSRGIGVHHGGILPIVKEVVEILFGRGLVKILFATETFAMGVNMPARCVVFSGIR
KHDGKSFRDILPGEYTQMAGRAGRRGLDPTGTVIIVVNDELPDQTSIQHMMLGTPAKLQS
QFRLTYNMILNLLRVEALRVEEMIKRSFSENASQKLLPDQQKEVVQHEKALSSLPKLQCE
VCLPDIEHYYDDTSTIVQHNGRLLAMVISNPSNSNMLASGRVAVLRDSHFRSNNVAILLK
ADLRQPSSFGRRFFALALVDQSTKSGEFDVDEQSVPPHWPPTPASLHAENATYEVRSVPL
ASIALVTSRIIKVDTTNIIDVHKKSDLLEATHSLKMLVQEWMSSGAIPEVDWGRIRTLEF
QETLQARNGLVKRQNSASCTLCIDFSEHYLLLHGQKILKKNISFLKLAISDQNLELIPDY
EQRIEVLKELNFIDDNSTIQLKGRVACEINSTNELVLTELILENTLANYDPEEVVALLSC
FVFQEKTDIDPIISPKLEQGRDAIVAILDRIGRVQDRHKVVVEEFRSNLKFGLTEVVYEW
AKGMPFEQITALTDVAEGTIVRVITRLDETCREVRDAARVIGDADLFKKMEEAQIKIKRD
IVFAASLYF
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggaagagtcacaagatcttctgatcagccaaatactgcagccaagtaagggcaatagt
gatgacttgctagagaaaatcggactgggcggtataccgtctcgcgaacaagtatatcaa
gaaatcgaagaaaaattgctattacctcctagcactttacccgaaaactggctttcaact
taccagatacattggcaacgcgaagtttcagtcccttctttgttgacgtatgaaccttct
ccaccgccaacatctcttacattcgtccgttcagggctgcaaggtcatgtcaccggttat
gcagaaactcctaatccacatgtatccacaggtcttacttctacttcgatggaccgtgct
cctggccctagtaaaaacttcgtaagaggaaaatcgggtcacgtccctttctggccagga
ggtttggaagatgttatctcgagttcgggaaatagttctattgaatctgcaaaggggctg
aggactgtcccgcctggtttcactagaggcctccgtctacctggagacgattttgaagac
gaagcacttgcccaattcgatgaaaaaatcaatgcagagggcattaaagagagtgatatg
cgaacgcatctaagacccaccaaaactactcgacgaactagattagcaactattatcaag
cgagattgggctcatgttgttgatatcaataaaccgatgactaacttccgtgaactggtg
ccagagatggctcacgaatatccgttcgaactggataccttccagaaagaggcagtatac
catctggagatgggcgactctgtttttgtcgccgctcacacctccgctggaaaaactgta
gttgctgaatatgccattgccttggctgagaagcatatgacccgagcaatctatacatct
cctatcaaggcgctttccaatcagaagttccgagatttcaagcaaaccttttcctcttct
tcggttggtattctgaccggagacgtacagattaaccccgaagcaagttgtcttgtgatg
accacggaaattctgcgcagcatgctatacaaaggagctgatcttatccgcgatgttgaa
ttcgtcatctttgacgaagtgcactatgtcaatgatgcagagagaggcgtggtatgggaa
gaagtaatcatcatgcttcctgatcacgttaacatcattctattatctgcaaccgtccca
aacacaaaggaatttgccgattgggttggacgcactaaaaaaaaagatatatatgtaatc
tcaacagcacaacggcctgtgcctctggagcattatatttatgctggaagggaaacattc
aaaattgtagacgcaaatcgaagatggatttctgaagggtacaaagatgcaggagaggcc
ctgaaaaggaaacaggataaagcgcgcgaagctgctggattgccgccagtacagcgggtt
ggcgctcgtggtgcagccccacgaggtggccaaaggggagggacgccaaccagaggcgga
caaagaggtgctactccgaacaacaggggagcacctcctgggcgtggaggaggaccatca
cgtattattcatactggggctgacaagaatctatatgtgcatttgctcaatcatctacag
aagaagacactactacctgttgtggtcttcacgttctccaagaagaaatgtgaagaaaac
gcggggacgttaacgaacgcggatttatgtacatcggtcgagaaaagtgaaattcatgtc
gcgatagaaaaggcgctttctcgattaaaaggtacggacaaaaaattaccacaaataagt
cgaatgcgtgatctgctttctcgcggcattggggtgcaccatggaggaatattacccatt
gtaaaagaggttgttgagattttgttcggtcgtggactggtgaagatcttgtttgccaca
gaaactttcgctatgggagtaaacatgcctgcgcgatgtgtagttttttccggtattcgc
aaacatgatggaaagagcttcagagatattttgcctggagagtacacgcaaatggcgggc
cgtgcgggaaggcgtggtttggatcctacaggaacggttattatcgtcgttaacgatgaa
ctccccgatcaaacatcgattcaacatatgatgctcggtactccggcaaagcttcaatca
cagtttaggttaacgtacaacatgattctcaacttgcttcgcgttgaagctctcagggtt
gaagagatgatcaaacgcagcttctctgaaaacgcttctcagaagctcttacctgatcaa
caaaaagaagttgtacagcatgaaaaagctctatcatcattgcccaaacttcagtgtgaa
gtttgcttgcctgatatagagcactactatgacgacacctctaccatcgtacaacacaac
gggaggctcctagctatggtcatcagcaacccttcaaattcaaatatgctagcatcagga
agggtagctgtcctcagagattcgcatttcaggtcaaataacgtagcaattctactaaaa
gcagatctgcgacaaccttcgagttttggcagaaggttctttgcacttgctcttgtggac
cagagcaccaaaagtggcgagtttgacgtcgacgaacagtctgttccccctcactggccg
cctacgcctgcttctttacacgcagagaatgcaacgtatgaggttaggagcgtgcctcta
gctagcatagcccttgtgacaagccggattatcaaagttgacacaacgaacattatcgat
gtccataagaagtccgacctacttgaagccacgcattcgttgaagatgctcgttcaggag
tggatgtcctcaggggctatacctgaggtggactggggtcgtatacgcactttagaattt
caggagacattacaggcgagaaatggcttggtgaagcgtcaaaatagcgcatcatgcacc
ttatgcattgatttcagcgaacactaccttttgctccatggtcaaaagattttaaagaag
aatatctcatttttgaaactggcaatctctgaccagaatttggaacttattcccgattat
gagcaaagaattgaggtactgaaggagctgaattttattgacgataattcaacgatacag
cttaagggtcgagtggcttgcgagatcaattctacaaacgagctcgttctcacggagcta
attcttgaaaataccttagccaactacgaccctgaagaagtggtcgccttgttatcgtgt
tttgtattccaagagaagacagatattgacccgatcatttcgccaaagctagaacaagga
cgtgatgctatagttgccatactcgacagaataggtcgtgttcaggaccgtcacaaagtt
gttgtcgaagaattccggtccaatctaaagttcggcctaacggaagttgtttacgagtgg
gctaaagggatgccctttgaacaaatcacggctctgactgatgttgcggaaggtactatc
gttcgggtgataacgcgtctagacgaaacatgccgagaagtgcgagatgctgcccgtgtt
attggcgatgcagatctattcaagaagatggaagaagcacaaatcaaaattaagagagac
attgtatttgctgctagtttgtatttttag
DBGET
integrated database retrieval system
