Serpula lacrymans: SERLADRAFT_451042
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Entry
SERLADRAFT_451042 CDS
T03135
Name
(RefSeq) hypothetical protein
KO
K06100
symplekin
Organism
sla
Serpula lacrymans
Pathway
sla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SERLADRAFT_451042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sla03021
]
SERLADRAFT_451042
03019 Messenger RNA biogenesis [BR:
sla03019
]
SERLADRAFT_451042
Transcription machinery [BR:
sla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SERLADRAFT_451042
Messenger RNA biogenesis [BR:
sla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
SERLADRAFT_451042
U7-dependent histone pre-mRNA processing factors
SERLADRAFT_451042
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_Maestro
HEAT_GCN1
DUF2286
Motif
Other DBs
NCBI-GeneID:
18816707
NCBI-ProteinID:
XP_007320695
JGI:
451042
LinkDB
All DBs
Position
Unknown
AA seq
1182 aa
AA seq
DB search
MAGNPIDPLQALSAALAVPPDSKEQADLLAALRESLEAHPNPIPILCTTLVKTVSGSGDS
LLKRWVLDLLHFAICRSSLSLEVRTQLASQSVDTLTALLNDSNQNTIKVAIQCLTTVYPL
LFRMLCSNRTNRQPWDSLSQCKARILEFVWAPKANNGIRISSLKFMQRVIIVQTRGVSDP
RVVFNTFCSTYYFILTVYFPNFVYLQLQNKNDPNISSVPADHPFMSGPALEAEGMKLLES
VITMLYTSQNADLLSAILNSWSNLIKQRPHLVQLVVSSLASWTPAALAGLSASSIKSVEK
GVRILLIHISRGPHGSSFGAQINEALSQQGARMDRATADEKARKIAAAANAAEASRKRPP
SAPAEDVDAKRVKLDQDIAASSAAFLADFDFTSLPVALITELIVANLQAFTEPSLSALVQ
TYRQSRGISPTPPVQPPQPVPEATLPTPTPRVHSQSVEPPPSFVKDEPVDPLQMDIDEEE
MEYEPDRLNLELSGEPSISEDAMILADVPETVLMDLDLKDFKLPSPKELSEDQRNQLMRN
SVNRIWDGTEDLMLGGEDLTQGNGMSPMDMWMLLIIRMITRVADPKEEGGDGDDAAKTAQ
DDMTLDFYVRQDKLRQTLCDYIMADFPARIRLATSWMNEEWYNDRIRLADDPNWRSNYDS
WLNQIVATYQTILEGKPEGKPDNKDKAFSRFLLDLPAVPSDVMHLLRDLSVEADKMHVGF
TSLRDFVVERPSLRADALHVLLELTTHPETVTRRAAINTVKRWVPDSQPMDGMIREFALQ
ILRRLQIRPPKADHKPADDPMDGEILEDNMEDGQLPSEELVQTPYLPEDIDIPARKSQIL
QHVELLFALSVKVPEFLDEIFTAYSQMEVSVQGAIQELITALIKSLGSSNGKLLTLMRTC
PPGAESLALRVLTIFTEHGRPSSQLVALVKGLISERDLDARFLIPIIAEMDKPDIMRHLP
RIVSILNGQQEPKNLVRSVFGSVVTTPPQTFGSVTSNLPRVRQSELLTPAELMVLLHEAE
KEIGLKSAIEAIGICFSMTDVFRSEILAVVMQQIVDEPVLPVLFLRTVIQAVTTYKSLVG
FVSTTLLSRLITKKIWQNPHLWEGFIRCAKVIAPASFGALLQLPKEQLRELVDKQPSLKS
GLRDYVTKKAGNKARVAGFLDIFGEDEGSTPLVPSEAIVPAA
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtaatccgatagaccctctgcaagctctttctgcggcattagctgtaccgcct
gattctaaagagcaggctgatttactggctgcattacgtgaatcacttgaagctcaccca
aatcctatacccattctctgtacaaccctcgtcaaaactgtatccggttcaggggactct
ctcctcaaaagatgggtcttggacctgctgcactttgctatctgtcgctccagtttgtct
ctcgaagtccgcacacaactcgcttcgcagtccgtggacacattgacggctctcctcaat
gattcaaaccaaaacactatcaaggtcgcaatacaatgtttaacaacagtctacccactg
ctgtttcgtatgctgtgttccaaccgcactaacagacagccttgggattccttgtctcaa
tgcaaggcacgcatcctcgaattcgtatgggctcccaaagccaacaacggcatacggata
tcatccctaaagttcatgcagcgggtaattatcgtccaaacgcgtggcgtatctgaccct
agggtagttttcaataccttttgctctacatactacttcatactcacggtgtactttcca
aacttcgtgtatctgcagcttcaaaacaaaaacgatccaaatatttcttctgttcctgca
gaccatcctttcatgtcaggaccagctttggaagctgagggcatgaaactcctcgaaagc
gtgatcaccatgctgtacaccagccagaacgccgacttactgtctgccatcttgaatagt
tggtctaatctgataaaacagcgtcctcatttagtgcaattggtcgtgtcatcattagcc
tcgtggacacctgccgctcttgctgggttatcggcttcttctattaaaagtgtagaaaag
ggggttcgaatattgcttatacatatttcgcgaggtcctcacgggtcctcatttggagcc
cagatcaatgaggcgttgtcacaacaaggagcccgtatggatagagccactgcagacgaa
aaggctcgcaaaattgctgcagccgctaatgctgcagaggcttctcgaaaacgccccccg
tcggctcctgcagaagatgtagatgcaaagcgcgtcaagctcgatcaagacatcgctgct
tcctctgccgctttccttgcagactttgactttacatcgctaccagttgctcttataacc
gagctcattgtagctaatcttcaagcatttactgaaccaagtttgtccgcgcttgtgcag
acatatcgtcaaagtcggggcattagccctactccccccgtgcagcctccacaacctgta
cctgaagcaactctgccgactcctacacctcgtgtccatagtcaatccgtcgaacctccc
ccatcatttgtaaaggatgagcctgttgaccctcttcaaatggatattgacgaagaggag
atggagtatgagcctgatagactgaatctcgagctatcgggagaaccctcgatttctgag
gatgctatgattctggctgatgttccagaaactgttttgatggacttggacttaaaggac
ttcaagctgccatcacccaaagaactctcagaagatcagcgtaatcaattaatgcgaaac
tcagttaatcgaatatgggacggcacagaggaccttatgttaggcggagaagatttaacg
caaggcaacggaatgtcgcctatggacatgtggatgttacttataatacgtatgattact
cgagtcgctgatcccaaagaagaaggaggggatggcgacgatgcagcgaagaccgcacag
gacgacatgactttggacttctatgtgcgacaggacaagctgagacagacgctatgcgac
tatattatggccgactttcctgctaggatacggctcgcgacctcgtggatgaatgaggag
tggtataatgaccgaatacgtctcgcagacgatccaaattggcgatcaaattatgattca
tggttgaaccaaattgttgctacctatcaaaccattttagagggaaagcctgaaggcaaa
cctgacaataaagacaaagccttttcacgtttcctcctcgacttgccagctgtaccttct
gatgtcatgcatctcttgcgtgatctttcggttgaggctgataagatgcatgtcggattc
actagccttcgcgattttgttgtggagcggccttctttgagggccgatgctttacacgtt
ctcctggagcttaccactcacccagaaacggtcactcgtcgcgccgccatcaatacggtg
aagcgctgggtccctgattcccagcctatggacggtatgatacgtgaatttgctctgcag
atactgcgtcgtctgcaaatacggccgcccaaggcggatcataaacctgctgacgaccct
atggatggggagatattagaagacaatatggaagatggccaacttccttcagaggaactg
gtgcaaacaccgtacttgccggaggatattgatataccagcaaggaaatctcaaatcttg
cagcatgtagagttattatttgccttatctgtcaaggttccagagtttttggatgagatt
tttacggcctatagtcaaatggaggtgtctgtgcaaggcgccatacaagaactcatcaca
gctcttatcaaatctcttggatcaagcaatggcaaactcctgacgctcatgcggacttgc
cccccaggggccgaatcgctggcattgcgtgttttgaccatatttacggagcatggaaga
cctagttcgcagttggtagcattagtcaaaggtcttatcagcgaaagggatcttgatgcc
cgttttctcattcctattattgcggaaatggataagccggatatcatgcgccatctccct
cgaatcgtgtccattcttaatggccaacaagaaccgaagaacctggttcgttctgttttt
ggatctgtcgtcaccacgcccccacaaacgtttgggagcgtaacgtcgaacctgccacgc
gtgcgccagagtgaattactgacgccggctgagctgatggtgttattacacgaggctgag
aaggaaataggactgaaaagtgctatcgaagccatcggtatttgtttctctatgacggac
gttttccgctccgaaattctagctgtggtgatgcaacagattgtggacgaaccggtttta
ccagtactgtttctccgtactgtgattcaagcggtcacgacttataaatcccttgttggg
ttcgtgtctaccacgctgttgtcgcgccttattaccaagaagatatggcaaaatcctcat
ctatgggaaggtttcatacgttgtgctaaagttatcgcgcctgctagtttcggggccctg
ttacagctacctaaggaacaactccgcgagcttgtagacaaacagccgagcctgaagtct
gggctacgggactacgtgaccaaaaaagccggaaacaaggccagggttgccggatttctt
gatattttcggagaggatgaaggcagcacgccattggtgccttcagaggcgatcgttcca
gctgcatag
DBGET
integrated database retrieval system
