Serpula lacrymans: SERLADRAFT_453400
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Entry
SERLADRAFT_453400 CDS
T03135
Name
(RefSeq) DNA-directed RNA polymerase II, subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sla
Serpula lacrymans
Pathway
sla03020
RNA polymerase
sla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SERLADRAFT_453400
09124 Replication and repair
03420 Nucleotide excision repair
SERLADRAFT_453400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sla03021
]
SERLADRAFT_453400
03400 DNA repair and recombination proteins [BR:
sla03400
]
SERLADRAFT_453400
Enzymes [BR:
sla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SERLADRAFT_453400
Transcription machinery [BR:
sla03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
SERLADRAFT_453400
DNA repair and recombination proteins [BR:
sla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
SERLADRAFT_453400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
18816922
NCBI-ProteinID:
XP_007323870
JGI:
453400
UniProt:
F8PAY6
LinkDB
All DBs
Position
Unknown
AA seq
1744 aa
AA seq
DB search
MLGHQFAYSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDEATHKPKLGGLMDPRM
GTIDRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADIS
DPSFADKIRHVRDPKARMAVVWAHCKTKMTCETDEPKEEGEGAENDEPKKGHGGCGHQQP
LVRKEGLKLFVQYKKPKDDDEEVKSLQPDKRLFTPSEVYTTFKKMSDSDLHLIGLSDEYA
RPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASVNVRRCEQEGAPAHV
ITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS
ARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPGARYVVRD
TGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFR
LNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLC
GIRKFTLRDTFLDWNQVQNILLWVPDWDGNVPIPSIIKPKPLWTGKQILSMVIPRGINIH
RAPEPKSSNPVFDDGMLIENGEIVFGIVEKKTVGASQGGLVHVVFREKGPDATRQIFTGI
QMVVNFWLFHNGFSIGIGDTIADTKTMSYITQQISSQKVKVAGIIDDATHDRLKAAPGMT
IRESFESKVQRELNLARDDCGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQS
VEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAV
KTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFVYGEDGMDGAFIERQKIDTFALS
DKEFEHNYRVDVTDPAGGFLPGVLQVGLDDSSLELQAKLDEEFTQLLEDRGVLRSFIFPR
ADATTPHYLPVNLQRIVQNAIQIFHIDRRKPSDLEPAYIIESLQQLSNRLVVVRGDDSLS
KEAQENASLTFRMHVRATFASRRVLEQFHLNREAFEWVLGEVEAKFNQSLVNPGEMCGTL
AAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLSVYLESDIAEE
VSGMLAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEEDSVFVESFFAIPDEEIESKL
HLQSPWLLRLELDRAKMIDRKLTMSYVAGRIAESFKTDLFVIWSEDNSEKLIIRCRVLGG
GDKEDDDGLGSIEEDIFLRQLENTMLNSVSLRGVKDIERVFLLQHDKVYFNDEGSIKSKK
EWVLETDGVNLKTVMCIDGVDFRRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFESSY
VNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCH
GIAENVMFGQMAPMGTGAFEVALDIDMLKDAIVDHRLPVQNMLAAHADGGMTPGQVAMTP
YDTNSPAWSEGNFKGESAAFSPLAVNGGEDPANFSFLGYGQSPVGAGGMSPAGPGYSPSS
PNVYSPTSPYVPQSPFGGATSPFGTSPYATSPFYDRARGPTSPTYSPTSPALNLTSPGYS
PTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRSPAQMSPSSPKYS
PTSPTSPSSPKYSPTSPTYSPASPAYSPASPAYSPTSPQWSPSSPAQNGTANRSHSYSTS
PSWD
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atgcttggtcatcaatttgcgtattctgcggctcctatccgcaaggtcaaggaagtgcag
tttggtatattgtcacctgaggaaattaaagcgtactctgtggcaaaaatcgagcatccc
gaagtgatggacgaagctacgcataagcctaaacttgggggccttatggatcctcgtatg
ggtactatagaccgtaacttcaaatgccaaacttgtggtgagggaatgtcagagtgtcca
ggtcattttggccatatcgagcttgctaggccagtttttcatccagggttcatcgtaaaa
gtgaagaagattctggagtgtatatgcgttaattgcgggaagctaaaagctgacatctcg
gatcccagtttcgcagacaagatccggcacgtccgtgatcccaaggctagaatggccgtt
gtctgggcgcactgcaagacaaaaatgacctgcgagactgatgaaccgaaggaagaaggt
gaaggagctgagaacgatgagccgaagaaaggccatggcggttgtggtcatcaacagccg
ctcgttaggaaagaaggactaaaactttttgtacaatataaaaagccaaaggacgacgat
gaggaagtgaagtcgttacaacctgataagcggctgttcacaccatccgaggtctacacc
acattcaagaaaatgtcagattctgatctacatcttatcggcctgtcagacgagtacgca
cgcccagagtggatgattctcaccgtcatgccagttcccccaccccctgttcgtccgagc
atcgccgtcgatggtggtgccatgagaagtgaggatgatttgacatacaaacttggcgat
atcatcaaggcatcggtcaacgttcgcagatgcgaacaagagggtgctcctgcacatgtc
atcacagagttcgaacaactacttcagttccatgtcgctacctatatggacaacgacatt
gctggcattcctcaggcattgcaaaagtcaggtcgacctgtaaaagctattcgcgcgagg
ttgaagggtaaagaaggccgtcttcgtggtaatctcatgggaaagcgtgtggacttttca
gcccgtacggtcatcaccggtgaccctaatcttgaacttgatgaagtcggagtacctaga
agtatagccatgaatttgacctatcctgaacgagtcactccttacaacattgcatacttg
caggagctggtgcgcaatgggcctacagcatatccaggggctagatatgttgtgcgagac
acaggcgaacgtatcgacttgcgttataataagcgcgccgatgcttttctgcagtatggt
tggatagtagagcggcatctcaaagatggagactttgtattgttcaaccggcagcctagt
ctgcacaaaatgagtatgatgagccatagagtgaagctcatgccctattcaacattccgc
ctaaatttatctgttacacctccgtacaacgccgatttcgatggtgacgagatgaacatg
cacgtacctcagagtgaagaaactcgcgcagaactgagtcagatagcttgggtgccacga
cagattatttcgccgcaagcaaataagcctgtcatgggtatagtacaggacaccctgtgt
ggtatcagaaaattcacgctcagggacactttcctcgactggaaccaagtccagaatata
ctcctttgggtaccggattgggacgggaatgtgccaataccctcgataataaaaccgaaa
cctctttggacagggaagcagattctcagcatggtcatcccgcgtggtatcaacattcat
cgtgcccctgagcccaagtcatcgaaccccgtgtttgatgatggcatgctaatcgaaaat
ggtgaaattgtttttggcattgtcgagaagaagactgttggagcatcccaaggaggcctt
gttcatgttgtctttcgtgaaaagggcccagatgccacacggcaaatcttcactgggatt
cagatggttgtcaacttctggctcttccataatggcttcagcatcggcatcggcgacact
atcgcggataccaagactatgtcttacatcactcagcagatcagctctcagaaggtcaag
gtagcgggtatcattgatgacgctactcacgatcgactcaaagcggctcccggtatgaca
attcgagagtcttttgaaagcaaggtccagagggagctcaatcttgcacgtgacgattgt
ggtcaatatgcgcaaaagagtttaaaggaggataataatgtcaagcaaatggtggtcgct
gggtcgaaaggatcatttatcaacatctcacagatgtcggtttgcgtgggccagcagagt
gtcgagggtcgtcgcatccctttcggattccgtcatcgtaccctgcctcatttcaccaaa
gatgatttcagtcccgaggcccgtggctttgtcgaaaattcttatttgcgaggattgacg
ccacaggaattttttttccatgccatggctggacgggagggtctcattgataccgctgtg
aaaacggctgagacaggttacattcagcgtcgtttggttaaagcactggaggatgtgatg
gtgtgctatgacgggactgtccgcaattcactaggtgacctagtgcagttcgtctatggc
gaggatggcatggacggcgcattcattgagcggcagaaaatcgatacgttcgccctgagc
gacaaggaatttgaacataattaccgtgtcgacgttacagatccagctggaggcttccta
ccaggtgttctgcaagttggtctcgacgacagctcactcgaattacaagccaaattggac
gaggagtttacgcagcttctggaggatcgaggcgtcctacgctcgttcatattcccccgc
gcggatgcaacgacaccccattatctgccagttaatctgcagcgcatcgttcagaacgca
atccaaatcttccacattgacagacggaaaccaagcgatcttgagcctgcatatatcatt
gaatctctgcaacaactctcaaataggctggttgttgtacgcggtgatgattctttgagt
aaagaggctcaggaaaatgcgtcgctgacattccgtatgcatgttcgcgctacgtttgcg
tctcgccgtgttctcgaacaattccatcttaaccgggaagcatttgagtgggtcttgggt
gaagtagaggctaaattcaatcagtctttggtcaaccctggagagatgtgtgggacactg
gctgctcagtcgattggtgaaccagctacccagatgacgctgaatacgttccattatgct
ggtgtgtccagtaaaaatgttacgctcggtgttcctcgtctaaaggaaatcatcaacgtc
gccaccaatatcaaaacgccgtccttatccgtctatctcgagtctgacattgctgaagaa
gtaagtggaatgctcgcgaagaacgttcaacaggaactcgcgtacacgtctttgcggacc
gtcacagcagctgtagagatttggtatgatccagaccctagctcgactattatcgaagag
gattctgttttcgtcgaatcgttctttgccattcccgacgaggagatcgagtccaagttg
catttacagtcgccttggctcctgcgtctcgaattagatcgagcgaaaatgattgatcgc
aaactcaccatgtcctacgtcgctggtcggatcgcagagagctttaaaactgatctcttt
gttatctggagtgaagacaactccgagaagcttatcattcgttgccgtgtcttgggtggt
ggtgataaagaggatgatgacggcctggggtcaatcgaggaggatatattccttcgtcag
ttggaaaacaccatgttgaactctgtcagcttgcgtggagtcaaagacatcgaacgagtc
ttcttgctccaacacgacaaggtatacttcaacgatgaaggtagcataaaatcgaagaag
gaatgggtgctcgaaacggatggtgttaatctcaagactgttatgtgtatagatggcgtt
gacttccgacggacgtactctaatagttgcgtggaggtcttcaacgtactgggtatcgag
gcggctcgcgctgctatcatgaaagagttgcgtggcgtcatcgagtttgaaagttcttac
gtcaattaccgccatcttgctcttctctgcgatctcatgactcatcgcgggacactcatg
gcaattactcgacatggtataaatcgagctgatactggagctttgatgaggtgttccttt
gaggaaacggttgaaattctgatggaagcggccgcagtgggagagaaggacgactgtcac
ggcattgcagaaaacgtgatgttcggtcagatggcgcccatgggtactggtgcattcgaa
gtcgcacttgacatcgacatgttgaaggatgctatcgtcgatcatcgtctaccagtacag
aatatgttggctgctcatgctgatggcggtatgactcccggacaagtcgcgatgacacct
tacgatacgaactcgccagcatggtctgaaggtaattttaagggagagtcagctgcgttc
tcgccgcttgctgtgaacggtggtgaagaccctgccaatttctctttccttggatatggt
cagagtccggttggagctggaggcatgtctccagcaggtcccgggtacagccccagttcc
cccaatgtgtattctccgacgtcgccttatgttccccaatcaccgttcggtggggctacg
tcgccctttgggacatcgccttatgccacttcgcctttctacgaccgtgctcgcggacca
acgtctcctacatactcgccgacgtccccagctcttaatcttacgtcgccaggttattca
cctactagtccgcgttattctccaacgtcaccttcattttctccgacatccccacggtac
agccctcagtctccatctttcagcccaacgtcgccgcgatactcgccaacgagtccttca
ttcagtccggcttcgccacgatcccctgcgcaaatgtctccatcctcgccgaagtattct
ccaacgtctccgacgtcgccatcttcgcccaaatattctcccacatcaccaacgtattcc
cctgcttctccagcatactctcccgcttctcccgcatatagcccaacgtcgccccaatgg
tcaccttcgagtcctgctcaaaacggaacagccaatcggagccattcgtacagcacttct
ccatcatgggactga
DBGET
integrated database retrieval system
