Serpula lacrymans: SERLADRAFT_458898
Help
Entry
SERLADRAFT_458898 CDS
T03135
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sla
Serpula lacrymans
Pathway
sla03013
Nucleocytoplasmic transport
sla03015
mRNA surveillance pathway
sla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SERLADRAFT_458898
09122 Translation
03013 Nucleocytoplasmic transport
SERLADRAFT_458898
03015 mRNA surveillance pathway
SERLADRAFT_458898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sla03019
]
SERLADRAFT_458898
03041 Spliceosome [BR:
sla03041
]
SERLADRAFT_458898
Enzymes [BR:
sla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SERLADRAFT_458898
Messenger RNA biogenesis [BR:
sla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SERLADRAFT_458898
Spliceosome [BR:
sla03041
]
Complex C
Other components
EJC/TREX
SERLADRAFT_458898
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SERLADRAFT_458898
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18817805
NCBI-ProteinID:
XP_007314666
JGI:
458898
UniProt:
F8NKQ5
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MSSHDNEDLIDYEDENDLPTNGAAVPSSNGAALATAVDGEGDKEKKNFSGIHSTGFRDFL
LKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVN
GEVSVLVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDSEILRDKTKCPHIV
VATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSA
TLAKEIRVTCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEETGKNRKLNELLDTLEFNQ
VVIFVKSVARAIELDKLLVSCNFPSISIHSGLQQEERIKRYTAFKAFEKRILVATDIFGR
GIDVERVNIVVNYDCPPDADSYLHRVGRAGRFGTKGLAITCVSSESDQQVMAAIQSRFEV
AVSELPEHIDPASYMTS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagctctcacgacaacgaggaccttatcgactatgaggatgagaatgaccttcccacc
aatggcgcagcagtaccatcatcaaacggcgccgcacttgcaacagcagttgatggcgag
ggtgacaaggaaaagaaaaacttctccgggattcactcgacgggattcagggatttcttg
ttgaagcctgaacttcttcgagctatcagtgacttgggtttcgagcatccatctgaagtt
caacaagaatgtattccccaggcggttctcggtatggatgttctgtgtcaggctaagtct
ggtcacggaaagacggctgtttttgtcttggcgaccctgcaacagttggaacctgtcaac
ggcgaagtatcggtactggtcctctgtcacacccgtgaattggctttccaaatcaagaat
gagtatactcggttcgccaagtatatgcccgatgttcgtgtcagcacgttctacggtggt
accccagtggcaaaggactcggagatcctgcgtgacaagactaaatgcccccatattgtt
gtcgccacacccggtcgattaaatgctcttgcaagggataaagtcttggatgcgaaaaac
gttaagcacttcgtgttggacgagtgcgataaaatgctggaacagcttgacatgcgccgt
gacgttcaagagattttccgagcaacacctcatcacaagcaagtcatgatgttcagcgca
actctggccaaggaaatacgcgtgacgtgcaagaagtttatggcaaaccctctggaaatc
ttcgtggatgacgagacgaagctcacgctccacggtttgcaacagcattacgtgaagctc
gaggaaaccggtaaaaatcgcaagctcaacgaactgctcgacacactggaatttaatcaa
gtcgttatctttgttaagtctgtggcacgagccattgagttggacaagctccttgtgtcg
tgcaattttcctagtattagtattcactccggtttacaacaagaggagcgtatcaagcgg
tatactgctttcaaagcattcgaaaaacgtatcctcgtggctacggatatcttcggtcgt
ggtattgatgtggagcgtgtgaacatcgtggttaactacgactgtccaccggatgcggac
agttacctgcatcgtgtgggtcgtgctggaaggtttgggacgaagggtcttgcgatcaca
tgtgtgtcgtcggaaagtgaccagcaggtgatggcagccattcagtcgaggtttgaggta
gcggtatcggaattgcccgaacacattgacccagcgagttacatgacgtcttga
DBGET
integrated database retrieval system
