Sphingorhabdus lacus: EUU25_02470
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Entry
EUU25_02470 CDS
T09898
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
slaa
Sphingorhabdus lacus
Pathway
slaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUU25_02470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaa03019
]
EUU25_02470
03009 Ribosome biogenesis [BR:
slaa03009
]
EUU25_02470
Enzymes [BR:
slaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EUU25_02470
Messenger RNA biogenesis [BR:
slaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EUU25_02470
Ribosome biogenesis [BR:
slaa03009
]
Prokaryotic type
rRNA processing factors
EUU25_02470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QGY79581
UniProt:
A0A6I6L5T0
LinkDB
All DBs
Position
complement(549157..551730)
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AA seq
857 aa
AA seq
DB search
MTTRMLIDARHREETRVAVVTGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPKEDRERLLAEEAEAAAEEAALREQEEEESEEPSDIMQG
SEEREDEVSDFIEIDSDDSVDTIDMSEGEEPDLSANGDESAEENARDDANSRNNRRRRGR
GGRNGGEGRAPKASDEVRAKRMNLRRRYKIQDVIHRRQVLLVQVVKEERGNKGAALTTYL
SLAGRYCVLMPNTSHGGGISRKIHSAADRKRLKSIISDLTLPSTMGCIIRTAGLARTKPE
IKRDFDYLARLWDEIRERTLRGAAPMLIHTDSDLIKRAIRDIYNKDIEEVFVEGPEGYKA
AKDFMKLLMPSHAKRVQHYADPVPLFQRYHVEDQLNAMYQPIVQLKSGGYIVINPTEALV
SIDINSGRSTKEHGIEATALSTNLEAAREIARQLRLRDMAGLVVIDFIDMEHHSNARKVE
RAMKEALKHDRARIQVGRISGFGLMEMSRQRLRTGVLEASTRQCPHCEGTGLVRTASSAA
LSALRLIEEEAAKGNGNQIVLQASQEATIYCLNNKRSELADIEERYHVRILIVPNGETEG
AKLAVSSSGPRPEAPVALPPIIDLEEDDFEDEIDDTEVEEEEVSEPRRAREDRPRDDSEG
GEGRRRKRRRGRRGGKSRDRDERPENGDGQGEVAAESAEQNDAPEAPTAEETKPKTRRGR
RGGRGRERGEAETGEATAEAVEVEAVAAAEPVAVEPVAEEKPKRRSRAKPKAETAVAIEA
PVEAEPTAKAAPKKRGKAKAETPAAEPEVVAEEVAPAKAKAPRKKAPAKEAKAEPAAEPA
AESDAPPRTGWWQRTFG
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgtatgctcatcgacgcgcgtcaccgggaagaaacccgggtcgcagtcgta
acaggaaaccggattgaggagtttgattttgaatcggccgagcacaagcagctcaaaggc
aatatctatctcgcaaaagtaacccgggtcgaaccgtcgcttcaggcggctttcgtcgat
tatggcggcaatcgccatggattcctggcttttgccgaaatccatcctgactattatcaa
atccccaaagaagaccgtgaacgtcttttggctgaagaagccgaggctgccgctgaagaa
gccgcacttcgcgaacaggaagaagaagagagcgaagagccctccgacattatgcaaggc
tcggaagagcgtgaagacgaagtgtccgatttcatcgaaatcgacagcgacgacagcgtc
gacaccatcgatatgagtgaaggcgaagaacctgacctcagcgccaatggcgacgagtcc
gcagaagaaaacgcacgggacgacgccaattcacgcaacaaccgccgtcgtcgtggacgt
ggtggtcgcaatggtggcgaaggccgcgctccaaaagccagcgatgaggttcgcgccaag
cgcatgaacctgcgccgccggtacaagattcaagacgttatccaccgccgtcaggttttg
ctggtgcaagtggtaaaggaagagcgcggcaataaaggcgcagctctgaccacctatctc
agccttgcaggccgctattgcgtattgatgcccaacacctcgcatggtggtggcatcagc
cgcaagatccacagtgcagccgaccggaagcgtttgaagtcgatcatttccgacctgacc
ctgccatcgaccatgggctgcatcatccgcaccgccggacttgcccgcaccaagcctgaa
atcaagcgcgacttcgattatctcgcgcgtttgtgggatgaaattcgcgagcgcacgctg
cgcggtgctgcgccgatgctgatccacaccgacagtgacctgatcaagcgcgccatccgc
gatatctataataaggatatcgaggaagtcttcgtcgaaggtcctgaagggtataaagcc
gccaaggatttcatgaagctgctgatgccaagccacgccaagcgtgtgcagcattatgcc
gaccctgtgcccttgttccagcgctaccatgtcgaagaccagttgaacgccatgtatcag
ccgatcgtacagctgaaatcgggcggttatatcgtgatcaacccgactgaagcgttggta
tcgatcgacatcaactccggccggtcgacaaaagaacacggcatcgaagccaccgcgctt
tcgaccaatctagaagccgcacgcgaaattgcccgtcagttgcgtttgcgcgacatggcc
ggtctggttgtcatcgactttatcgatatggagcatcattcgaacgcccgcaaagtcgag
cgtgcgatgaaggaagccctgaagcatgaccgggcccggattcaggtcggtcgtatctcg
ggcttcggcctgatggaaatgagccgtcagcgtttgcgcaccggcgttctggaggcatcg
acacgccagtgcccgcattgcgaaggcacaggcctcgtccgcaccgcctcctccgctgca
ctgtccgcattgcgcttgatcgaagaggaagccgcaaagggcaatggcaaccaaatcgtg
ctgcaagcgagccaggaagcgacaatttactgccttaataacaagcgcagcgaattggcc
gacattgaggaacgctatcatgtccgcattctgatcgtccccaatggcgaaaccgaaggt
gcgaaattggcggtcagcagttcgggaccacgccccgaagcacctgttgccttgccgccc
atcatcgatctcgaagaagatgatttcgaagacgaaatcgacgacaccgaagtcgaagag
gaagaagtcagcgaaccgcgccgtgcacgcgaagaccgtccccgcgacgacagcgaaggt
ggcgaaggccgtcgtcgcaaacgtcggcgaggccgtcgcggcggcaagtcgcgcgatcgt
gacgaacgtcctgaaaatggcgatggccaaggcgaagttgcggccgagagcgccgagcaa
aacgacgctcccgaagcaccaaccgccgaggagaccaagccgaaaacacgccgtggccgc
cgaggtggtcgtggacgcgaacgtggcgaagcggaaaccggtgaagccaccgcagaagcg
gttgaagtagaagcggttgctgcggctgagccagtagctgttgaaccggttgctgaggaa
aagccgaagcgtcgtagccgggcaaaacctaaggccgaaacggcagtggctatcgaagct
ccggtggaagccgaaccaactgcaaaggcagcgcccaaaaagcgtggcaaggcgaaagcc
gaaacgcccgccgccgagcccgaagtggttgcggaagaagtcgcacctgccaaagccaag
gcaccccgtaaaaaagcccctgcaaaggaggcgaaagcagagcccgccgctgaaccagcg
gcagagagtgacgcaccgccccgcactggctggtggcagcgcactttcggttaa
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