Sphingorhabdus lacus: EUU25_04025
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Entry
EUU25_04025 CDS
T09898
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
slaa
Sphingorhabdus lacus
Brite
KEGG Orthology (KO) [BR:
slaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slaa03032
]
EUU25_04025 (topA)
03400 DNA repair and recombination proteins [BR:
slaa03400
]
EUU25_04025 (topA)
Enzymes [BR:
slaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EUU25_04025 (topA)
DNA replication proteins [BR:
slaa03032
]
Prokaryotic type
DNA Topoisomerases
EUU25_04025 (topA)
DNA repair and recombination proteins [BR:
slaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EUU25_04025 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QGY79853
UniProt:
A0A6I6LC46
LinkDB
All DBs
Position
complement(869117..871657)
Genome browser
AA seq
846 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGPGYKVLASYGHIRDLPPKDGSVDPDNGFEMLWDNYADKAK
QLKAITDEAKKADGLILATDPDREGEAISWHVQEVLAKKKALPKNVGRVTFNAITKAAVT
EAMARPRELDIDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVERD
REIEAFRPQEYWSVKANMEHKGQKFEARLTRHLGVKLDKMDLKTESDAEVARLAVETGNF
RIETVETKPVTRNPQPPFTTSTLQQEAARKLGFSASHTMRIAQGLYEDGAITYMRTDGVQ
MDGSAISAARKTISDRFDSGYLPEKPRIYQTKAKNAQEAHEAIRPTDFSKDKAGSGDHGR
LYDLIYKRAMASQMASARLERTTVDMLDGTGQTGLRATGQVMKFPGFLAVYEEGLDDSEG
EDSAILPPMTAGDAPAKHAVEKTQHFTQPPPRFSEATLVKRLEELGIGRPSTYASTIQVL
KDRAYVRVEKNRFFAEESGRLLTAFLERFFERYVAYDYTAGLEDQLDDISGGRAQWQAFL
ETFWRDFKPKTVEVMDQKPSDITAELDKFLSPYLFPEREDGSDPRLCPKCGEGRLALRGG
KFGAFVACSNYPDCKYTRKFAQPGGENGEDTGPEVLGVHPETQLEVSRKSGRFGPYVEIG
EGKEAKRASIPKDVPAEDFGLEWAVKLLSLPRTVGLHPESGEPVTASIGRYGPYLAHAGK
YARLTSTAEVFETGMNSAVVKLAEAAANPGRGRGAARAPLKELGKHPRTEAEIKLMEGRF
GPYVTDGTTNATLPKSIAPDALTLEEAAQLIDTRAAMPSKGKPKKKAAPKKKAPAKKAKK
AAAKAE
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgcaattagtcatcgttgaatcacctgcaaaagccaagacaatcgagaagtatctgggc
cctggctacaaggtgcttgcttcctatggacatattcgggatctgccgccgaaagatgga
tcggttgacccggacaacggctttgaaatgctgtgggacaattatgccgacaaggcgaag
cagttaaaggcgatcaccgatgaagccaaaaaagcggacggcctgatactcgcaactgac
cccgatcgcgaaggtgaagccatcagttggcatgttcaggaagtgttggcgaagaaaaag
gcgcttcccaaaaatgtagggcgcgtgacgttcaacgccattaccaaggcggcagtcacc
gaagccatggcgcgcccgcgcgaactcgatatcgacctgatcgacgcctatcgcgcccga
cgcgcgcttgattatctggtcggcttcacgctttcacccgtgttatggcgcaaactgccc
ggcgcaaaatccgccggtcgtgtgcagtccgttgcgctccgccttattgttgaacgtgac
cgggaaatagaggcttttcgtccgcaggaatattggtcggttaaggccaatatggagcat
aagggccagaaattcgaagcccgtttaactcggcatctgggcgtaaagctcgacaagatg
gatttgaaaacagaaagcgatgcagaggtagcgcgtctggcagtagagacgggtaatttc
cggatcgagaccgtcgaaacgaagccggtaacccgcaacccacaacctccgttcacaacg
tctaccttacagcaagaagctgcgcggaagcttggcttctccgcaagtcacaccatgcgc
attgcgcagggtctctacgaagatggcgccatcacctatatgcggaccgacggtgtgcag
atggacggcagcgccatttcggcggcccgaaaaacaatctctgatcgtttcgacagcggt
tatcttccggaaaaaccacgcatctaccaaaccaaggccaaaaatgcccaggaagcgcac
gaagcgatccggccgactgacttttcgaaagacaaggccgggtcgggggatcatggccgt
ctttatgacctgatctacaaacgtgcgatggcgagccagatggcgtcagcacgcttggaa
cgcactaccgtggatatgctggacggcactggacaaaccggactgcgcgcgacgggccag
gtgatgaaattccccggatttcttgctgtttatgaagaaggtctggacgatagcgagggc
gaagacagcgcgattttgccgccgatgactgcaggtgatgcgccagcaaaacatgccgtc
gaaaagacccagcatttcactcaacccccgccccgtttctccgaagcgaccttggtcaag
cggttggaagagctcggtattggtcggccttcaacctatgcgtcgaccattcaggtattg
aaagaccgggcctatgtccgtgtcgagaaaaaccgtttctttgcagaggaatcggggcgt
cttctcacggcatttctggaacggtttttcgaacgctacgtcgcctatgattacacggcg
gggctggaagaccagctggacgacatcagtgggggacgggcccagtggcaggcatttctg
gaaacgttctggcgtgatttcaagcccaagaccgtcgaggtgatggaccagaagccgtcg
gatattaccgctgaactcgacaaattcctgtccccctatctcttcccggaacgcgaagac
ggcagtgatccacgcctatgtccaaagtgcggtgaaggacgccttgcattgcgcggcggt
aagttcggcgcttttgtggcgtgctccaactatccggattgcaaatatacacggaaattc
gcgcaacctggcggcgaaaatggcgaggataccggtcccgaagtcctcggtgttcatccg
gaaacccagttggaagttagccgcaagtcaggtcgttttggcccttatgtggaaattgga
gaaggaaaagaggccaaacgcgcttcgatccccaaggatgtgcctgcagaagattttggt
ttggagtgggccgttaaactgctttcgcttccacgcacagtcgggcttcatcctgagagc
ggagagccggttacggcgtccattggacgctatggcccctatcttgcgcacgccggtaaa
tatgcgcgtttaacgtcgaccgccgaagtgttcgagacaggcatgaacagcgcagtcgtc
aaattggcagaggcggctgcgaaccccgggcgtggtcgcggtgcagcgcgggctcccttg
aaggaactgggcaagcacccgcgtacggaagctgaaataaagctgatggaaggtcgcttc
ggtccctatgtcaccgacggaacgaccaacgcgacactgcccaaatcaattgcacccgat
gccctaactttggaagaagccgcgcaactcattgatacgcgcgccgccatgccgtcgaag
ggcaagcctaaaaagaaagccgcgccgaagaaaaaggcaccggccaaaaaagcaaagaaa
gctgcggccaaggcggagtga
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