Sphingorhabdus lacus: EUU25_07460
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Entry
EUU25_07460 CDS
T09898
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
slaa
Sphingorhabdus lacus
Brite
KEGG Orthology (KO) [BR:
slaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaa03019
]
EUU25_07460 (hrpB)
Enzymes [BR:
slaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EUU25_07460 (hrpB)
Messenger RNA biogenesis [BR:
slaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EUU25_07460 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Cas3-like_C_2
AAA_19
ResIII
CON_HrpB
Motif
Other DBs
NCBI-ProteinID:
QGY80472
UniProt:
A0A6I6LDC2
LinkDB
All DBs
Position
complement(1591304..1593757)
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AA seq
817 aa
AA seq
DB search
MGRPLNAGLPVDAVLPDLLATLAAQPNAVLIAPPGAGKTTMVAPRLLNQPWCSGKILLLS
PRRLAARMAAERIAELMGEQVGGLVGYATRMDSKQSAATRILVLTEGIFRNRIIADPELA
GISAVLFDEVHERSIDSDFGLALALEVQGAFRPDLRLVTMSATLDGARFSALMDGAPVIE
SEGRSWPLELRYVGRQVSQPVETDIARTIRQALGEESGDLLAFLPGTREIDRTAEALAGM
PDSIVVHKLHGQVDPAAQRQAVRPDPEGRRKIILATNIAETSLTIDGVRIVVDSGLARRA
RFDRAAGVTRLVTERASLSAATQRAGRAARQSAGVAYRLWEEAGNGGLPPFDPPEILESD
LAPLLLDCALWGEGDPTRLRWLDAPPASALNEARKALLAIDALTDGGAITPLGRKLATLP
LPPQLAHMVLRAAAHGQADTAAELALLLQERGLGGQGEDLESRHERFRRDKGGRTDAAKA
LARRIGKMAGEGGTQAPLSVGALVALAYPERIAKRRDAKGENWISALGRGLRLDPLSPLA
QAEWLAVADLQGAASGARILSAAALSEAEVLDLFADRLETKTETRYDAANDRVEIRQRQR
LGAIVLREATVAKADEAVLADALLSAVRQCGIAALPWSDAAIALRQRAAFAGHEGLSDES
LLETLDQWLPPCLNGAARLRDISKQALSDALDTLLGWDSKQQVERLAPAHFTSPAGTTHP
VDYSAEAGPTVELRVQALFGLDAHPCIGMERLPLVLSLTSPAGRPIQTTRNLPEFWRGTW
RDVAKEMRGRYPKHNWPDAPWESVASLKTKKAQARSA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgacctttgaatgcgggattgccggtggacgctgtcttgccggatttgcttgcc
actctggccgcacagcccaatgccgttctgattgctccgcccggtgcgggcaagaccacg
atggtcgcgccgcgcctgctgaaccagccgtggtgcagcggcaaaatccttctcctgtcc
ccacgccgtctcgcggcccgcatggcggccgaacggattgcggagctgatgggggagcag
gtgggcggccttgtcggctatgcgacgcgcatggacagcaagcagtccgccgcgacgcgc
atcctggtcctgacggaggggatattccgcaaccgcatcatcgccgaccccgaactggcg
ggcatctccgccgtgctgttcgacgaggtgcacgaacgcagcatcgacagcgatttcggc
ctcgcgctcgcgctggaggtgcagggggcgttccggcccgacctgcggctggtcacaatg
tccgcgacgctcgacggcgcgcgcttttccgcgctgatggacggcgcgccggtcattgaa
agcgaagggcgaagctggccgctggagctgcgctacgtcggacggcaggtcagccagccg
gtcgagaccgacatcgcccgcaccatccggcaggcacttggtgaggagagcggtgacctg
ctcgccttcctgcccggcacccgcgagatcgaccgcacggcagaggcgctggccgggatg
ccggacagcatcgtcgtccacaaactgcacgggcaagtcgaccccgcggcgcagcggcag
gcggtccggcccgatcccgaaggccgccgcaagatcatccttgccaccaacatcgcagag
accagcctcaccatcgatggtgtccgcattgtcgtcgacagcggcctcgcccgccgtgcg
cgctttgaccgggcggcgggggtgacgcggctggttaccgaacgcgccagcttgtccgct
gccacccagcgcgcaggccgcgcggcgcggcaatcggcaggggtcgcctaccgcctgtgg
gaggaggcgggcaatggcggccttccgccctttgatccgccggaaatcctggaaagcgac
ctcgcaccgctgctgctcgattgcgccttatggggggagggcgatcccacccgcctgcgc
tggctcgacgcgccgcccgcctcggcgctgaacgaagcgcgcaaggcgctgctcgccatc
gacgcgctcaccgacggtggagcgatcacgccccttggccgaaagctcgccaccctgccg
ctgccgccgcagctggcccatatggtcctgcgcgctgccgcgcacggacaggcagacacc
gccgcagagcttgcgttgctgctgcaggagcgcgggcttggcgggcagggcgaggatctg
gaaagccgccacgaacgcttccgccgcgacaagggtggccgcaccgacgccgccaaggcg
ctcgcccgacggatcggcaagatggcaggcgaaggtggcacccaagccccgctgtcggtc
ggcgcactggtcgcactggcctatcccgaacgcatcgccaaacgccgcgatgccaagggc
gagaactggatcagcgcattgggccgcggcctgcgtctcgacccgctgtcgccgctggca
caggccgaatggctcgccgtcgccgacctgcagggtgcagcatccggcgcgcgcatattg
tccgccgccgccctcagcgaggccgaggtgttggacctgtttgccgaccgtttggagaca
aagaccgaaacccgctacgacgccgccaacgaccgtgtcgaaatccggcaacggcaaagg
ctcggcgcgattgtgctgcgcgaggcaaccgtcgccaaggcggacgaggctgtgctggcc
gacgcgctgctgtcggcggtgcgccaatgcggcattgccgcgctgccctggtccgatgcc
gccattgccctgcgccaacgcgccgcctttgccggacatgagggattgtcggacgaaagc
ttgctggagacgctcgaccagtggctgcccccttgcctgaacggcgcggcgcggttgcgg
gatatctcgaaacaggcgctgtccgatgcactcgacaccctgctcggctgggacagcaag
caacaggtcgaacggcttgcccccgcccatttcaccagccccgccggcaccacgcaccct
gtcgactattcggcggaggcgggaccaaccgtcgagcttcgtgtgcaggcgctgttcggg
ctggacgcgcatccgtgcatcggcatggaacgcctgccgctggtgctcagcctgacctca
cccgcaggccgcccgatccagaccacccgcaacctgcccgaattctggcgcggcacttgg
cgcgatgtcgccaaggagatgcggggacgctatcccaagcataattggcccgacgccccg
tgggaaagcgtggccagcctgaaaaccaaaaaggcccaagcacgcagcgcttga
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