Sphingorhabdus lacus: EUU25_13075
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Entry
EUU25_13075 CDS
T09898
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slaa
Sphingorhabdus lacus
Pathway
slaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUU25_13075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaa03019
]
EUU25_13075
Enzymes [BR:
slaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EUU25_13075
Messenger RNA biogenesis [BR:
slaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EUU25_13075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QGY81457
UniProt:
A0A6I6LBJ0
LinkDB
All DBs
Position
complement(2775494..2777035)
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AA seq
513 aa
AA seq
DB search
MSFFHDLGLAQPILKALEAAGYDTPTPIQQQSIPPLLQGRDLCGIAQTGTGKTAAFALPS
LHHFATKPKARQQYSCRMLVLSPTRELAAQIAESFRTYGKFLGLKIDCVFGGMPIFSQKK
RLAGGVDILVATPGRLIDLIEQRAITLKDVEIFVLDEADQMMDLGFIHALKRIDQLLPKQ
RQTLFFSATMPKAIAELGNRFLNNPVRVSVAPAATTAERVEQFVTFVEQREKQTLLTLKL
QSEEIDRALVFTRTKHGADRVVRGLAGAGIQAAAIHGNKSQGQRTAALQAFRDGKIKILV
ATDIAARGIDVPGVSHVFNFELPNVPEQYVHRIGRTARAGREGVAMSFVAGDERGYMKDI
ERLTGVRAMTLGLPEGFRAAVAALPPPVADKKPQQSRGGRGGGQPGGGRTNYAGKKLGGN
NGGIGRNGETRQRTHAPQGGWQPAIGPKDGSREGGADARPRNDNAASGDRRPTADRAFAA
RKESRRDPGAPARNYGPKKSGPGKFRGAVKRAG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttttccatgacttgggccttgcccaacctatcctgaaagcgctcgaagcggcg
ggatatgacacccccacgccgatccagcagcaatcgatcccgcctttgctgcagggccgc
gatttgtgcggtatcgcgcagaccggaaccggcaagaccgcagcctttgcgttgccgtcg
ctccaccattttgcaaccaagcccaaggcgcgccagcaatatagctgccgcatgcttgtg
ctttcgccaacacgcgaactggccgcgcagattgcggaaagcttccgcacctatggcaaa
ttcctcggcctcaagatcgattgtgtttttggcggaatgccgattttcagtcagaaaaag
cgtcttgcaggcggtgtcgatatcctcgttgcgacgccaggccgtttgatcgatctgatc
gaacagcgcgcgatcaccctgaaggatgtcgaaatcttcgttctcgacgaagccgaccag
atgatggaccttggctttatccatgccttgaagcgtatcgatcaattgttgccgaaacag
cgccagacgctgtttttctcggccacgatgcccaaggcgattgccgagcttggcaaccgc
ttcttgaataaccctgtccgcgtatcggttgcccctgcggccaccacggcggaacgcgtt
gaacaatttgtgacctttgtcgagcaacgcgaaaaacagacgctgctgacgctcaagctg
caaagcgaagagattgaccgtgcactggtctttacgcgcaccaaacatggtgccgaccgg
gtcgtacgcggtcttgcgggtgccggtatccaggctgctgccatccacggcaacaagagc
caaggccaacgtaccgcagcgcttcaggcgtttcgtgacggcaagatcaagattctggtt
gcaaccgacatcgccgcacgcggtatcgatgttcccggtgtcagccatgtgttcaacttc
gaactgcccaatgtgccggaacaatatgtccaccgcattggccggaccgcacgtgcaggc
cgcgaaggcgttgcgatgagcttcgttgccggcgatgagcgcggctatatgaaggatatt
gaacgtctgaccggtgtacgcgccatgaccttgggcttgcccgagggcttccgcgctgcc
gttgcagcattgccgccgcccgtcgccgacaagaaaccacaacagtcacgtggtggccgt
ggtggcggacaacccggtggtggtcgtaccaactatgccggcaaaaagctgggtgggaat
aatggcggcatcggacgcaatggcgaaacccgccagcgcacacatgccccgcaaggtggc
tggcaaccggccatcggtcccaaggacggcagtcgtgaaggcggtgcggatgcccgtccg
cgcaacgacaatgccgcatcgggtgaccgccgtccaaccgccgaccgcgcatttgctgcc
cgcaaggaaagccgtcgcgatcccggtgcaccggcccgcaactatggcccgaaaaaatcc
ggcccgggtaaattccgcggtgcggtaaagcgcgccggataa
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