Stenotrophomonas lactitubi: AB9L18_00340
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Entry
AB9L18_00340 CDS
T10939
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
slab Stenotrophomonas lactitubi
Brite
KEGG Orthology (KO) [BR:
slab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slab03016
]
AB9L18_00340
Enzymes [BR:
slab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AB9L18_00340
Transfer RNA biogenesis [BR:
slab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AB9L18_00340
Prokaryotic type
tRNA splicing ligases
AB9L18_00340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XGY86129
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All DBs
Position
79827..81053
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AA seq
408 aa
AA seq
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MTTLNYDVIQQPGAAPIKLWTRGVPLEDQAREQLQNIARLPFIHKWISVMPDVHLGKGAT
VGSVVPTIGAIIPAAVGVDIGCGMIAVRTTLVASDLPDNLSAVRSAIERAVPHGRSVTRG
GRDKGSWDTPPELAVEGWAQLVDDFALICERHPRLKNTNNLKHLGTLGTGNHFVEVCLDQ
EQRVWFMLHSGSRGVGNAIGTYFIELAKQEMRRWMINLPDQDLAYLPEGSQHYGDYVFAV
DWAQRFARMNREVMMRNVVAAVRTVISKPFEAEAEAVNCHHNYVNRETHFGKEVMLTRKG
AVSARKGELGIIPGSMGAKSFIVRGLGNEDSFHSCSHGAGRVMSRTQARKLITVDDHAKA
TAHVECRKDAEVVDESPAAYKPIEAVMEAQRDLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccactctcaattacgacgtgatccagcagccgggtgctgcgccgatcaagctgtgg
acccgcggcgtgccgctggaagaccaggcgcgcgagcagctgcagaacatcgccaggctg
cccttcatccacaagtggatttcggtgatgcccgacgtgcacctgggcaagggcgcgacc
gtgggttcggtggtgccgaccatcggcgcgatcattccagcggcagtgggcgtggacatc
ggctgcggcatgatcgcggtgcgcaccacgctggttgccagcgacctgccggacaatctg
tccgctgtgcgcagcgcgatcgaacgggcggtgccgcatggccgcagcgtcacccgcggt
ggccgcgacaagggcagctgggacacgccgcccgaactggcggtggaaggctgggcgcag
ctggtggatgacttcgcattgatctgcgagcgtcatccgcgcctgaagaacaccaacaac
ctcaagcacctgggaacgctgggtaccggcaaccacttcgtcgaggtctgcctggaccag
gagcagcgcgtgtggttcatgctgcactccggttcgcgtggcgtgggcaatgccatcggc
acctacttcatcgagctggccaagcaggaaatgcgccgctggatgatcaacctgcccgac
caggacctggcctacctgcccgagggcagccagcactacggcgactacgtgttcgcagtg
gactgggcgcagcgtttcgcacgcatgaaccgcgaggtgatgatgcgcaacgtggtggct
gcggtgcgcacggtgatcagcaagccgttcgaggccgaggccgaggcggtgaactgccac
cacaactacgtgaaccgcgagacccactttggcaaggaggtgatgctgacccgcaagggc
gcggtgagtgcgcgcaagggcgagctgggcatcattccgggcagcatgggggccaagagc
ttcatcgtgcgtggcctcggcaacgaggacagcttccacagctgcagccacggtgccggc
cgcgtgatgagccgtacccaggcgcgcaagctgatcacggtggatgaccacgccaaggcc
accgcgcacgtggaatgccgcaaggatgcggaggtggtggatgaatcgccggcggcctac
aagccgatcgaggcggtaatggaggcccagcgcgatctggtcgagatcgtgcacacgctg
cgccaggtggtgtgcgtgaagggatga
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