Stenotrophomonas lactitubi: AB9L18_10735
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Entry
AB9L18_10735 CDS
T10939
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
slab Stenotrophomonas lactitubi
Pathway
slab02020
Two-component system
slab02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slab00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AB9L18_10735 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AB9L18_10735 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slab03021
]
AB9L18_10735 (rpoN)
Transcription machinery [BR:
slab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AB9L18_10735 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_IclR
Sigma70_r4
HTH_31
HTH_Crp_2
HTH_23
MarR_2
Motif
Other DBs
NCBI-ProteinID:
XGY84207
LinkDB
All DBs
Position
2378034..2379443
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AA seq
469 aa
AA seq
DB search
MKASLSTQLGQQLHLTPQLLQSIRLLQLDGLHLEQEIQRLLESNPLLEIEDAEAPAAEAT
DAASTTLDTAAFDELPESSMWDVSGANWQDGDDDRMARIAAGESSDPQLRVLQRLALDLD
ERELAVAAFWLEHCDDAGYLQAPLAQLQLLASAQFDIDANGVEAIRQHLLQGEPAGMAAQ
DLRESLLAQLCSLHGVVPARHLAARILDGALDALAAHDYPALARQHDAEIEDVREAVRLI
LSLQPRPGDSLLPERNAVVVPDVVAWHADEQWKVALNPATSRRVSINSQYEQALAETSDA
APALREMLQEARWFSRGLSMRYDTLLRTARVIVERQAAFLVRGEEAMAPLTLKEVAEEIG
MHESTVSRITTGKYLQTPRGTFELKHFFAVRLEGASVSGQAVKAMVRRLIDAEPAGRPLA
DEAIAGLLSRQGVNIARRTVAKYREQLDIAPARERRRVNARQPQLARVG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcttcactttcgacccagctgggtcaacagcttcacctcaccccgcagttgctg
cagtcgatcaggctgctgcagctcgacggcctgcacctggagcaggaaatccagcgcctg
ctggaatccaatccgctgctggaaatcgaagacgccgaagcgcccgccgctgaagccacc
gatgcagccagcaccacgctcgatacggctgcgttcgacgagctgcccgaatcctcgatg
tgggatgtgtccggcgccaactggcaggacggcgatgacgaccgcatggcacgcatcgcc
gctggcgaatcgagcgatccgcagctgcgcgtgctgcagcgcctggcgctggacctggac
gagcgcgaactggccgtggccgccttctggctggaacactgcgacgatgccggctatctg
caggcaccgctggcacagctgcagctgctggccagcgcgcagttcgacatcgatgccaac
ggcgttgaagcgatccgtcagcacctgctgcaaggcgagccggccggcatggccgcgcag
gacctgcgcgaatcgctgctggcccagctgtgcagcctgcacggcgtggtgccggcccgt
catctggccgcgcgcattctggacggcgcgctcgatgccctggccgcccacgactacccc
gccctcgcccgccagcacgatgccgagatcgaggacgtgcgcgaagccgttcgcctgatc
ctgtcgctgcagccgcgcccgggcgacagcctgctgcccgagcgcaatgcggtggtggtg
cccgacgtggtcgcctggcacgccgatgaacaatggaaggtggcactgaacccggccacc
agccgccgggtgtcgatcaacagccagtacgaacaggccctcgccgagaccagcgacgcc
gcccccgcgctgcgcgagatgctgcaggaagcgcgttggttcagccgcggcctgtcgatg
cgctacgacaccctgctgcgcaccgcgcgggtgatcgtcgagcgccaggcggccttcctg
gtgcgtggcgaggaagccatggcaccgttgaccctgaaggaagtggccgaggaaatcggc
atgcacgaatccaccgtttcgcgcatcaccaccggcaagtacctgcagaccccgcgcggc
accttcgagctcaagcacttcttcgccgtgcgcctggaaggcgccagcgtgtccggccag
gcggtcaaggccatggtccgccgcctgatcgacgccgagcccgccggtcgcccgttggcg
gacgaggccatcgctggcctgctgtcccgccagggggtgaacattgcccgacgaaccgtc
gcaaaataccgcgaacaactggatatcgccccggcccgcgaacggcgccgggtcaacgcc
aggcaaccgcagctggcccgggtgggctga
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integrated database retrieval system
