Stenotrophomonas lactitubi: AB9L18_14100
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Entry
AB9L18_14100 CDS
T10939
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slab Stenotrophomonas lactitubi
Pathway
slab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB9L18_14100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slab03019
]
AB9L18_14100
03009 Ribosome biogenesis [BR:
slab03009
]
AB9L18_14100
Enzymes [BR:
slab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB9L18_14100
Messenger RNA biogenesis [BR:
slab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB9L18_14100
Ribosome biogenesis [BR:
slab03009
]
Prokaryotic type
rRNA helicases
AB9L18_14100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
XGY84835
LinkDB
All DBs
Position
complement(3109491..3111419)
Genome browser
AA seq
642 aa
AA seq
DB search
MSQETQAQLQFAQLGLSDSVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLTALRRGVHIVVGTPGRVIDHLNRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPVEVTIATKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIVFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDNRINKFTSRITETLGQGGLDFYRQLLERFESEQNVP
AIEVAAALAKMMQGDTPFLLQPPVRAPREERAPRERFERTERPERGDRNERGPRFERGPR
RDDAEGGFEQRPRRDVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIG
RIDIHDDFSLLDLPAQMPSDVLTHLQKVWVSGQQLQMRPLAAGEEVNPAPRPFKPRFDKR
GPGGPGGPGAPRRSGPGGPGGDRDSRPPRRDGFNKPRGPRSF
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaaacccaagcgcagctgcagttcgcgcagctcggcctgtccgattctgtc
atgcaggctgtcactgccatcggctacgaaacgccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccagaccggtaccggcaagacc
gcagccttcgcgctgccggtgctgtccaacatcgacctgcagcagatcaagccgcaggcc
ctggtgctggccccgacccgcgagctggccatccaggttgccgaggcgttccagtcctat
tcctcgaagattcccggcttccgcgtgctgccggtgtacggcggccagccttacggccag
cagctgacggccctgcgccgcggcgtgcacatcgtggtcggtacccccggtcgcgtcatc
gaccatctgaaccgcagcacgctggacctgtccgagctgaagacgctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctg
ccggaaaagcgccaggtggcgctgttctcggccaccatgccgccggccatccgtcgtatc
gcgcagacctacctgaaggacccggtcgaagtcaccatcgcgaccaagaccaccacttcg
gccaacatccgccagcgctactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacgcgatgatcgtcttcgcgcgcaccaaggccggc
accgaggaactggccagcaagctgcaggcccgtggcctggccgctgccgccatcaacggt
gacatgcagcaggcccagcgtgagcgcaccatcgccatgctgaaggaaggcaagctggac
atcctggtcgccaccgacgtggccgcccgtggcctggacgtggaacgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgtatcggccgtaccggc
cgtgccggccgcagcggtgaagcgatcctgttcgctaccccgcgcgagaagggcatgctg
cgccagatcgagcgtgcgacccgtcagccgatcgaagaaatgcagctgccgagcgtggaa
gcggtcaacgacaaccgcatcaacaagttcacctcgcgcatcaccgaaacgctgggccag
ggcggcctggacttctaccgccagctgctggagcgtttcgaatccgagcagaacgtgccg
gccatcgaagtggccgccgcactggcgaagatgatgcagggcgataccccgttcctgctg
cagccgccggtgcgtgccccgcgcgaagaacgtgccccgcgtgagcgtttcgagcgcact
gagcgcccggaacgtggcgaccgcaacgagcgcggcccgcgcttcgagcgtggtccgcgt
cgtgacgatgccgagggtggcttcgagcagcgtccgcgccgtgacgtgccgccgcgcggc
gcaccggagcagggcatggagacctaccgcatttcggtcggccaccagcatggcgtgaag
ccggccaacatcgtcggcgccatcgccaatgaagccggcctggaaagccgcttcatcggt
cgtatcgacatccacgacgatttctcgctgctggatctgccggcacagatgccgtcggac
gtgctgacccacctgcagaaggtgtgggtgtccggccagcagctgcagatgcgtccgttg
gccgctggtgaagaggtcaatccggcgccgcgtccgttcaagccgcgcttcgacaagcgt
ggtccgggcggtccgggtggcccgggtgctccgcgtcgcagtggtccgggtggccctggc
ggcgaccgcgacagccgtccgccgcgtcgtgatggcttcaacaagccgcgcggcccgcgc
agcttctaa
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