Stenotrophomonas lactitubi: AB9L18_14130
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Entry
AB9L18_14130 CDS
T10939
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
slab Stenotrophomonas lactitubi
Pathway
slab03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB9L18_14130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slab03000
]
AB9L18_14130
03400 DNA repair and recombination proteins [BR:
slab03400
]
AB9L18_14130
Enzymes [BR:
slab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
AB9L18_14130
Transcription factors [BR:
slab03000
]
Prokaryotic type
Helix-turn-helix
AraC family
AB9L18_14130
DNA repair and recombination proteins [BR:
slab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AB9L18_14130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
RecR_HhH
CobS_N
Motif
Other DBs
NCBI-ProteinID:
XGY84841
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All DBs
Position
3115831..3117309
Genome browser
AA seq
492 aa
AA seq
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MDTALALDTAACDRARLARDARFDGVFFTAVRSTGIYCRPVCPAPPPKPRNITYYPTAAA
AASAGYRPCLRCRPELAPLAQQALAGQAVQRALALIHAGFLQDQPVADLAGKIGLSARQL
QRLFVERLGATPGQIHATHRLLLAKQLLTETTLPVTDVALAAGYNSLRRFNTAFLQGCGM
APTVLRRQHHPLAADDGGLVLRLGYRPPLDFPRMLSFLRKRSLPGIELIGEDSYQRVLGT
AERPTLLRVTADPKRPELRLQLGAVDPRLIPDIVRRVRRVFDLDADLQQVHAALGNEPLL
ARGIDERPGLRVPGGWDGFEVGVRAVLGQQVSVAAATTFARRLVDAYGAHLPGMPSEFDR
QFPAPDVLAEAPLESIGLPRSRAATVRALAAACASGQLDFGPGQALEDLVARCVALPGIG
PWTAQYIALRGLGQPDAFPAGDLVLQQVLGHAQGQRLSERATEARSQSWRPWRAYAVLHL
WHLSGTFVGEPS
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggataccgcactcgccctcgacacagccgcctgcgaccgcgcccgcctggcccgtgat
gcgcgcttcgacggcgtgttcttcaccgccgtgcgcagcaccggcatctactgccggccg
gtgtgcccggcgccgccaccgaagccgcgcaacatcacctattaccccacggctgctgcc
gccgcttcggccggctatcgtccctgcctgcgttgccgccccgaactggccccgctggca
caacaggcactggccgggcaggccgtgcagcgtgccctggccctgatccatgcaggcttc
ctgcaggaccagccggtggccgatctggccgggaagatcggcctcagcgcacgccagctg
caacgcctgttcgtcgaacggctgggcgcaacgccagggcagatccacgccacccatcgc
ctgctgctggccaagcagcttctgaccgaaaccacgctgccggtgaccgacgtggcgctg
gccgccggttacaacagcctgcgccgcttcaatacggccttcctgcagggctgcggcatg
gcgcctaccgtgctgcgccgccagcaccatccactggccgccgacgatggcgggctggta
ttgcgcctgggctatcgaccgccgctggatttcccgcggatgctgtcgttcctgcgcaag
cgcagcctgcccggcatcgagctgatcggtgaagacagttatcagcgcgtactgggcaca
gccgagcgccccaccctgctgcgggtcaccgccgatccgaagcggcccgagctgcgcctg
cagctgggcgcggtcgacccgcgcctgattccggacatcgtgcgccgcgtgcgtcgcgtg
ttcgacctggatgccgacctgcagcaggtgcacgcagcactgggcaatgaacccctgctg
gcacgaggcatcgacgagcgccccggcctgcgcgtaccgggcggctgggatggcttcgag
gtgggcgtacgcgcggtgctgggccagcaggtaagcgtggcggcggcaaccacgttcgcg
cgccggctggtcgatgcctacggtgcgcacctgcccggcatgccgtctgaattcgaccgt
caatttccggcgccggacgtgcttgccgaagccccactggaatcgatcggtctgccacgc
agccgcgccgctaccgtgcgcgccctcgccgcggcctgcgccagcggccagctcgacttc
gggccaggccaggcactggaagatctcgtcgcccggtgcgtggcactgcccgggatcggc
ccgtggacggcgcagtacattgccctgcgcgggctcggccagcctgatgccttccccgcc
ggtgatctggtgctgcagcaggtgctgggccacgcacagggccagcgcctcagcgaacgc
gccaccgaagcgcgttcgcaatcgtggcgcccatggcgcgcctatgccgtgctgcatctg
tggcacctgtccggcactttcgttggagaaccctcatga
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