Sulfurimicrobium lacus skT11: SKTS_18630
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Entry
SKTS_18630 CDS
T06796
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slac
Sulfurimicrobium lacus skT11
Pathway
slac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SKTS_18630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slac03400
]
SKTS_18630 (mfd)
Enzymes [BR:
slac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SKTS_18630 (mfd)
DNA repair and recombination proteins [BR:
slac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SKTS_18630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
HemY_N
Motif
Other DBs
NCBI-ProteinID:
BCB26977
UniProt:
A0A6F8VCZ1
LinkDB
All DBs
Position
complement(1915779..1919213)
Genome browser
AA seq
1144 aa
AA seq
DB search
MLLHQPLPAPGQRIRYTGLHGSSDALALAQLATQARPLVILTETAWQAQRLRDELPFFAP
QLAVHLLPDWETLPYDQFSPHQDLVSERLATLYQITHNACDVVIVPVTTALYRLPPREFL
AAHTFFLNQGTKLDLDALRQQLTLAGYTHVTQVLTPGEYSVRGGLVDLFPMGSAVPYRLD
LFDQEIESIRTFDVDTQRSIYPVKEVRLLPAREFPLDEAGISLFRQNFREKFEGDPSKSQ
LYKDVSNGLAPLGIEYYLPLFFDHTATLLDYLPENALLCLHHDLEGAAEQFWLDTRSRFR
LLSGDRNRPLLPPEELFLSVDTFFGAIRPFPRVEIRSDADQPALTLPVPPVQVDRRAESP
VQKLRGFVESFNGRILLVAESLGRSETMAQYLAEHGLKPAMCENFAQFESSTERFMLGAG
GLSTGFLLTADASHLTPHPSLALITETELYATQVRQSRLRESTRKSNVENMLRDLSELKV
GDPVVHEQHGIGRYLGLVNLDLGEGETEFLHLEYAGSDKLYVPVSNLHVISRYSGAAPDS
APLHRLGSGQWEKAKKKAQQQARDTAAELLNLYAQRAARQGYTFKLNPRDYEAFAASFDF
EETPDQAAAIQAVIEDMTSGRPMDRLVCGDVGFGKTEVALRAAFVAVADGKQVAILVPTT
LLAEQHFNNFSDRFADWPVKIAELSRFRSAKEQTEALKGLAAGNIDIVIGTHKLIQKDVK
FNNLGLVIVDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLSMSLEGLRDFSVIATA
PQKRLAIKTFVAPHSDGVIREAVLRELKRGGQVYFLHNEVETILNVQEKLAKLLPEARIG
VAHGQLRERELEHIMRDFYQQRFNVLLCTTIIETGIDIPTANTIIMNRADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPGDEAALTPQAKKRLEAIQMMEDLGAGFYLSMHDLEIRGAGEI
LGEGQSGDMQEIGFSLYADMLNQAVKALRDGKEPDLAQPLCVTTEINLHTPALLPKEYCG
DINQRLTLYKRLANCDSQDELDVLHEELIDRFGLLPPPATALLETHHLRILAKPLGIVKI
DASSEAIVAQFVPNPPIDPVKIIQFIQKQPGCKLAGPDKIRITAPLPDIEQRVGAIKQFF
KRLQ
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgttacttcaccagcctcttcccgctcccgggcaacgcatccgctacaccggcctgcac
ggttccagcgacgccctggctttggcccaactggcgacccaagcccgcccgctggtgatc
ctgaccgagaccgcctggcaagcccagcggctgcgtgatgagctgccgttttttgccccg
cagctcgcggtgcatctgctgccggactgggaaacactgccttacgaccagttctccccg
caccaggacctggtttccgaacgcctcgcgacgctctaccagatcacccacaatgcctgc
gacgtggtcatcgtgccggtcaccactgcgctctaccgcctgccgccacgcgagttcctg
gccgctcacacttttttcctcaaccagggcacgaagctcgacctcgacgccctgcgccag
caactcaccctggcgggctacacccatgtcacccaggtgctcacgccgggcgagtactcg
gtgcggggcgggctggtggacctgttccccatgggcagcgcggtgccttaccggctcgac
ctgttcgatcaggaaatcgagtccatccgtaccttcgatgtggacacccagcgcagcatc
tacccggtcaaggaagtgcgcctcctgccggcgcgcgaattccccctggatgaagccggc
atcagcctgttccgccagaacttccgcgaaaaattcgagggcgatccgtctaaaagccag
ctctacaaggacgtcagcaacggcctcgcccccttgggcatcgagtattacctgccactg
tttttcgaccacaccgcgacgctgctcgactacctgccggagaatgccctgctttgcctg
caccacgacctcgaaggcgcggcagaacagttctggctcgacacccgctcgcgtttccgc
ctgctgagcggcgaccgcaaccgtccgctgctgccgccggaagaactgtttctctcggtg
gacactttcttcggcgccatccgcccgttcccgcgcgtcgaaatcaggagtgacgcggat
cagcctgccctgacgctgcccgtgccgccggtccaggtggatcgccgcgccgaaagcccg
gtgcaaaaactgcgcggcttcgtggaaagcttcaacggccgcatcctgctcgtggccgaa
agcctgggacggagcgaaaccatggcccagtacctggccgagcatggcctgaaacctgcc
atgtgcgaaaactttgctcaattcgaatccagcacggagcgtttcatgctgggcgcgggg
ggcctgtccaccggctttctcctcaccgccgacgcctcacaccttacccctcacccctca
ctcgcattaatcaccgaaaccgagctctacgccacccaggtacgccagtcgcgactgcgc
gagtcgacgcgcaagagcaacgtcgagaacatgctgcgcgacctttccgagctcaaggtc
ggcgacccggtggtgcacgagcagcacggcatcgggcgctacctcggcctggtcaacctg
gaccttggcgaaggggaaaccgagtttctccacctggagtatgccggcagcgacaagctc
tacgtgccggtgtccaacctccacgtcatcagccgctacagcggcgcggcgcccgattcg
gcaccgctgcacaggctcggcagcggacaatgggaaaaagcgaagaagaaggcgcagcag
caggcgcgcgataccgcagccgaactgctcaatctttatgcccagcgcgccgcgcgccag
ggctataccttcaagctcaacccgcgcgattacgaggccttcgccgccagtttcgacttc
gaggaaacccccgaccaggccgccgcgatccaggcggtgatcgaggacatgacctcgggt
cgccccatggaccggctggtgtgcggcgacgtcggcttcggcaagaccgaagtcgccttg
cgcgcggctttcgtcgcggtcgccgacggcaagcaggtggcgatcctggtgcccaccacg
ctgctcgcggaacagcatttcaacaacttttccgaccgtttcgccgactggccggtgaag
atcgcggaactgtcgcgcttccgctccgccaaggaacagaccgaggcactcaagggactg
gctgcgggcaatatcgacatcgtcatcggcacccacaagctgatccagaaggacgtgaaa
ttcaacaacctcggcctggtgatcgtggacgaggaacaccgcttcggggtgcgccagaag
gagcagctcaaggccttgcgcgccgaggtggacgtgctgacgctcaccgccacacccatt
ccgcgcaccctgtcgatgtcgctggaaggcctgcgcgacttttccgtcatcgccaccgcg
ccgcaaaaacgcctggccatcaagaccttcgtcgcaccccacagcgacggcgtgatccgc
gaggcggtgctgcgcgagctgaagcgcggcggccaggtgtatttcctgcacaacgaggtg
gaaaccatcctcaacgtgcaggaaaaactcgccaagctgctgcccgaggcgcgcatcggc
gtggcccacggccaactgcgcgagcgcgaactggaacacatcatgcgcgacttctaccag
cagcgcttcaatgtactgctgtgcaccaccatcatcgaaaccggcatcgacatccccact
gccaacaccatcatcatgaaccgcgccgacaagttcggcctggcccagctgcaccagctg
cgcggccgtgtcgggcgctcgcaccaccaggcttacgcctacctgctcacccccggcgat
gaagcagcgctgacgccgcaggcgaaaaaacgcctggaagcgattcagatgatggaagac
ctgggggcgggcttttacctttcgatgcacgacctggaaatccgcggcgcgggcgagata
ctgggagaaggccagagcggcgacatgcaggagatcggtttcagcctttacgccgacatg
ctcaaccaggcggtgaaagcgctcagggacggcaaggaaccggatctcgcccagccgctg
tgcgtcaccacggaaatcaacctgcacaccccggcgctgctgcccaaggaatattgcggc
gacatcaaccagcgcctgacgctgtacaagcggctcgccaactgcgacagccaggacgag
ctggacgttctgcacgaggagttgatcgaccgcttcggactgctgccgccgcccgccacg
gccttgctcgaaacgcaccacctgcgcattctcgccaagccgctaggcattgtaaaaatc
gacgccagcagcgaagccatcgtggcgcaattcgtgcccaacccgccgatcgaccctgtt
aaaatcattcagttcatccagaagcaacccggctgcaagctggccggacccgataaaatc
aggattaccgccccgttgccggatatcgagcagcgggttggcgccatcaaacaattcttc
aagcgactgcaataa
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