Silene latifolia (white campion): 141585877
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Entry
141585877 CDS
T11116
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
141585877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141585877
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
141585877
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Trypan_PARP
AAA_22
DEAD
Motif
Other DBs
NCBI-GeneID:
141585877
NCBI-ProteinID:
XP_074263046
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All DBs
Position
6:complement(955962..960778)
Genome browser
AA seq
1200 aa
AA seq
DB search
MKREKLEFVPVGKRTRLQCRLREKELNERNKRVRLAARSKHRKVYAKENILDSEDDSDGE
DVKVVDEAEYLRHLFLLEYRDSSPDVAVVVFEENIDNSAHLVGERSNPLRIGFDDNENDK
DNEDGFEGCSALMEVEDIQFSGMKPGSEGTGGVGDGGQSSEMHQGFEGGGGGDVMPMQSV
SEDDTHSVASLDDDDDRRLSDEDFEVDEAEIRNIFSPEYSSAEDGECGKKTRKSNHNNGG
GEQEVVPVIVSDADRGIVDEHVDNADHGIVIVSDADHGTVDEHVDNADHGIVDEHVDNGD
HVDNGIVDNRLEKNFDEEIQRRLDDSEMDVQLVFKSGEYGSNINQSESESSKSSNMGREP
ENNNMGGKEPEPEPEPEPEPEPEPEPEPEPEPEPKNKILCMLPKKSNEAINSVWKSPEKS
NEARSSSPRKSNEAKNTTLKIKKRNRKLKLNEAESIMLNTILENRNAGLISCIHSAPVSE
KTQKSMNLPLKFRFGGQNTPPEDCEEDQDTENLFRDLEFALRTCDIGAQTSFEGEHGHVN
PCDSAVECQKLCHEGKHYLIHDEEIGIRCKYCSLVKLEIRHVTPAFNKNPFGRDRRRNIG
QFPSDNANALTGSHLPDCNDDPANSESNGIQGTVWELIPGILETLYPHQQEGFEFMWRNI
EGGIKLDKLGNPNKFGSGGCIICHAPGTGKTRLAITFLLSFIRKYPMSKPVIIAPKSMLL
TWEEEFARWNIDVPFININKPELSGNEDLEVLKHAENVKHQKSTIRIAKLYTWAMGKGIL
GISYTLFEKLAGDRKGVDKQVRRTLLEQPGILVLDEGHTPRNDQSNIWNVLNDVQTRRRI
ILSGTPFQNNFEELINTVSLVREEFENPFLPGKRMKYARNSTARRGLMNCNVDNERRIAM
LKNRMKPFLHVHKGEILKKTLRGLFHSVLLLKPSDLQKNCFQQLSALKNGLKLDHLVSIA
SVHPSLLHSCDQIPDSLKVLLKCHRRNIDAGVKIRFLFDLINLAQGEKILVFSQFLPPLE
LIKSLLKLRYHWAEEKELLYMDGKQDVRQRQAFIRHFNNPKSEARVLLASTKACCEGIHL
VGASRVVLLDVVWNPSVERQAISRAYRLGQKKDVFVYHLITAGTQEEEKYYWQVTKDRVS
EKVFSSEIESKQNVEMIPQVSEDRILEEMIQNEKIRNMFVKIIYQPKADELIESFGPVNL
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagggagaagttagagtttgtgccagtaggaaaaaggactaggctgcaatgtcgt
ttaagggagaaggagttaaatgaaagaaacaagagggttcggttagctgctcggagtaag
cataggaaggtatatgctaaggaaaacattcttgatagtgaggatgatagtgacggagag
gatgttaaagtcgtagatgaggctgagtacttgagacatctgtttctccttgaatatagg
gatagttctccagatgtggctgtggtggtgtttgaggaaaatatcgataattcagcccat
ttagtaggggagagatcgaacccattaagaattgggtttgacgacaatgagaatgataaa
gataatgaagacggttttgaaggttgttctgcgcttatggaagtggaggacattcagttt
tcgggaatgaaacctggttctgaaggtactggtggtgttggtgatggcggtcagtcttct
gaaatgcatcagggttttgaaggtggtggtggtggtgatgttatgcctatgcaatctgtt
tcagaggatgatacacattcagttgcatctttggatgatgatgatgatcgtaggttaagt
gatgaagactttgaagtggacgaggctgaaatacgtaatatctttagtcccgagtactct
agtgctgaggatggcgagtgtggaaagaagactcggaagagtaatcataataatggagga
ggagagcaagaagtggttcctgtcattgttagtgatgctgaccgtggtattgttgatgaa
catgtcgataatgctgaccatggtatcgtcattgttagtgatgctgaccatggtactgtt
gatgaacatgtcgataatgctgaccatggtattgttgatgaacatgtcgataatggtgac
catgttgacaatggtattgtggataaccgtctagagaagaattttgatgaggagatccaa
aggagactcgatgacagtgagatggatgtgcaattggttttcaagagtggcgagtatggt
agcaacatcaaccaaagtgagtcggagtcatccaagagtagtaatatgggaagagaacct
gagaataacaatatgggaggaaaagagcctgagcctgagcctgagcctgagcctgagcct
gagcctgagcctgagcctgagcctgagcctgagcctgagcccaagaataaaatactgtgc
atgttgccaaagaaaagcaatgaggcgataaattcagtatggaagtcgccggagaaaagc
aatgaggcaagaagttcgtcaccaaggaaaagcaatgaggcaaaaaatactaccctcaaa
ataaagaagcgaaacaggaagttaaaactcaatgaagctgaaagtataatgctgaacaca
atactagaaaacagaaatgcaggactgatttcctgtattcattccgcgcctgtcagtgag
aaaactcagaaaagcatgaatcttccgctgaagtttaggtttggaggtcaaaatacacct
cctgaagactgtgaagaggatcaagatacagaaaatctcttccgggatcttgaatttgcc
ctccgaacctgtgatattggtgctcagacttcttttgagggtgaacatggtcatgttaat
ccttgtgatagcgcagttgagtgccaaaaactctgccatgaaggcaagcactatttaatt
catgatgaagaaatcggaatcaggtgcaaatactgctcattagtgaagcttgagataaga
catgtcacaccagcatttaacaagaatccatttgggagagatcgaagaaggaacattggg
cagtttccttctgacaatgccaatgctcttactgggtctcatcttcctgactgcaacgac
gatcctgcaaattctgaatcaaatggcattcagggaactgtatgggaactcatccctggt
atactagagacgttataccctcaccagcaagaaggctttgagttcatgtggaggaacatt
gaaggaggaataaagctcgacaaacttggtaatccgaacaaatttggttcgggaggatgt
atcatatgtcacgctccagggacgggaaaaacccgcctggcaatcaccttcctgctatct
ttcatcaggaagtacccgatgtcaaagcctgttataattgctcctaaaagcatgctcctt
acatgggaagaagagtttgctagatggaatattgatgttccatttattaacataaacaaa
cctgaactttctgggaatgaggaccttgaggttctcaaacatgctgaaaatgtcaagcac
cagaaatcgaccattcggatagcaaagctgtatacttgggcaatggggaagggtattttg
gggattagctataccctatttgagaaacttgctggtgataggaaaggtgttgataagcag
gttaggcgaactcttctcgagcagccgggtattttggttttagacgaagggcatacaccg
aggaatgatcagagtaacatctggaatgtgttgaatgatgtccaaaccaggcgcaggatt
attctttcgggaacaccttttcagaacaactttgaggagcttattaatactgtttctttg
gttagagaagaatttgagaatcctttcttaccaggaaagcgtatgaaatatgccaggaac
tcgactgcaagaagaggtttaatgaactgcaatgtagacaatgaaagaagaattgctatg
ttgaagaataggatgaaaccctttctccatgttcacaagggggagatcttgaagaagacg
cttcgcgggttatttcattcagttctcctattaaagccatctgatttgcagaaaaactgt
tttcagcagttaagcgcgttgaaaaatggccttaaattggatcatttggtctctatcgcc
tcagtgcacccttcgcttttgcactcgtgtgatcagattcccgattctctcaaagtttta
ctgaaatgtcacagaagaaacattgatgctggagttaagataagatttctgtttgatctc
atcaatttagctcaaggagagaaaattcttgttttcagccaatttctgccgcccttagaa
ctcatcaaaagtttgttaaaattgcggtaccattgggcagaggagaaggaattactttac
atggatgggaaacaagatgtgaggcaaagacaagcctttatacgacatttcaataacccg
aaaagtgaagccagggttctacttgcttccacaaaagcatgttgtgagggaattcatcta
gtcggggcgtcaagggtggttttgcttgatgtggtctggaacccatctgtagaaaggcaa
gccataagccgggcttataggctcggacagaaaaaagacgtctttgtgtatcacctgata
accgcaggaacacaagaagaagagaagtattactggcaggtgaccaaagaccgggtttca
gaaaaggtgttttcttccgaaatagaaagcaagcagaatgtggagatgataccgcaggtt
tctgaggatcgcattctggaagagatgatccagaatgagaaaattaggaacatgtttgtg
aaaattatctatcaacctaaagctgatgaattgatagagagttttggtcctgtcaatctg
tag
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