Silene latifolia (white campion): 141585942
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Entry
141585942 CDS
T11116
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
141585942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slaf03021
]
141585942
03036 Chromosome and associated proteins [BR:
slaf03036
]
141585942
Transcription machinery [BR:
slaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
141585942
Coactivators
SAGA/TFTC/STAGA complex
141585942
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
141585942
STAGA complex
141585942
TFTC complex
141585942
SAGA complex
141585942
SLIK complex
141585942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
WD40_like
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
141585942
NCBI-ProteinID:
XP_074263123
LinkDB
All DBs
Position
6:2216638..2227352
Genome browser
AA seq
669 aa
AA seq
DB search
MDDELVDKVVLRYLKNKGFNESELKSYEDKLVHSRTSSSPSPIDPQLSQLLLHFGSESES
LPAQYQDGYSKLRSWAYGSLDLYKHELLRVLYPVFIHCFMDIVAKGHLQEARSFFNTFRE
DHEVMHQRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYAHGLLYKYLHNNQSITM
LGVINEHIHFDPYPGQPSSIIDDSEAVTIVGGGQDAVDLINQKEIQWGMLEDSLEDRLEK
TGGLLLESDKVDVENKEAENEETKKKSADGGKQAAPSKKSKKDKVNVAAGKPARPEANTT
SIAPRVKPELSLPVMPIEVEQSILDDLRNRVQLSSASLPSVCFYTFLNTHNGLNCASISH
DGALVAGGFSDSSLKVWDMSKRGQQTSNSGQSDQEAASNDNVLGTNIDNRPYTLFRGHSG
PVYSASFSPLGDFILSSSADSTVRLWSTNLNANLVCYKGHNYPVWDVQFSPFGHYFASCS
HDRTARIWSMDRVQPLRIMAGHLSDVDCVRWHVNCNYIATGSSDKTVRLWDIQSGECVRI
FIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLATGRCITPLVGHTSCVWTLAFSGEGS
LLASGSADCSVKLWDVNSSTKTTKSEEKTGSINRLRSLKTLYTKSSPVYSLTFSRRNLLF
GAGVFSKPS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgaattagttgataaagtagtgttgcgatatctgaagaacaaaggttttaac
gaatcagaactcaaatcatatgaagataaattagttcattcaagaacaagttcttcccct
tctcccattgatcctcagctttcgcaacttctccttcacttcggttccgagtctgagagc
ctcccagcacaataccaggatggatatagcaagctcagatcatgggcttatggttcgctt
gatttatacaagcatgagttgcttcgagtgctttatccagtatttatccattgtttcatg
gacattgttgcaaaagggcaccttcaagaagcccgtagttttttcaataccttccgtgaa
gaccatgaggttatgcaccaaagagacttacaaaagcttgaaggagtcctttctccttct
catttggaggagatggagtttgctcacacattaaggcagagcaaagtgaacatcaagatt
tgtcagtatgctcatggacttctttataaatatctgcacaataatcaatcaattacaatg
cttggagttataaacgaacacatccactttgacccttatcctggtcaacctagttcaata
attgatgattctgaagcagtgaccatagttggtggtggccaagatgcagttgacttgata
aaccagaaagaaattcaatgggggatgctagaagattcattagaagatcgcttggagaag
actggcggtttacttttagagtctgataaagttgatgttgaaaacaaggaggcggaaaac
gaagaaaccaagaaaaagtctgctgatggaggaaaacaagccgcaccatccaaaaaatca
aaaaaagataaagttaacgtagcggctggaaaacctgcacgacctgaggccaacactaca
tccatagccccaagagtcaaaccggagcttagtttgcccgtaatgccaattgaagttgag
cagtctatcttggatgaccttcgaaatcgtgtgcaattgagtagtgcttccctaccgtca
gtatgcttttacacatttctcaacacacacaatggtttaaattgtgcctcgatttcacat
gatggtgctttggttgctggtggattttcggattcctccctcaaggtttgggacatgtca
aaacgtgggcaacaaacgagcaactccggacaaagtgaccaagaggctgcaagcaatgat
aatgtgcttggtacaaatatagacaatagaccctacactttatttcgaggtcattctggg
cctgtttactccgcctcttttagtcctctcggggatttcatcctctcttcttcagctgat
tcaactgtgaggctgtggagtacgaacctaaatgccaatcttgtgtgctacaagggtcat
aattatcctgtttgggatgtgcagttcagcccatttggacattattttgcttcttgttct
catgatagaacagctaggatatggtctatggaccgggtacagccgctgagaattatggca
gggcatttatcagatgtcgattgtgtccgatggcatgtcaactgtaattacatagccact
ggatcaagcgacaaaactgttcgtttatgggacatacagagcggggaatgtgtcaggata
tttattggtcacagaagtatgatattgtcattagctatgtcacctgatggtcgatatatg
gcatctggtgatgaagatggcaccatcatgatgtgggatcttgctactggtcgttgcatc
actcctttggttggtcacacgtcatgtgtatggaccctggcttttagtggtgaaggctca
cttcttgcatctggatcggcggactgctctgtgaaactgtgggatgttaactcaagcaca
aagacaactaaatcagaggaaaaaaccgggagtataaacagactaagatcattgaagacg
ctttatacaaagtcttctccagtctactctctaacgttttctaggaggaatctgctattc
ggagctggggtcttctctaaaccttcatga
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