Silene latifolia (white campion): 141586074
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Entry
141586074 CDS
T11116
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141586074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141586074
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
141586074
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
141586074
NCBI-ProteinID:
XP_074263296
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Position
6:complement(4520408..4525222)
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AA seq
201 aa
AA seq
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MVAQSSSVVAVHPLSSYSFGTKEPKLEKDTSVADRLARMRVNYMKEGMRTSVEGILLVQE
HNHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLSSKLGANSSIQPNWQIGECVATW
WRPNFETVMYPYCPPHITKPKECKKLYMVHLPEREYFAVPKNLKLLAVPLFELYDNIQRY
GPVISTIPQQLSRFQFNMISQ
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atggtggctcaatcatcatcagtagtagcagttcatccactttcaagttacagttttggt
acaaaagaacctaaacttgagaaagacacttctgttgctgatcgtcttgctcgtatgaga
gtcaattacatgaaagaaggcatgaggactagtgtagaaggaattttactggtccaagag
cataatcatccgcacattcttcttctacaaattgggaacacattctgcaaacttcccggt
ggtcgtttaaaacccggtgaaaatgaaattgacgggctgaagaggaaactttctagcaaa
cttggtgctaactcctctattcagcctaattggcagattggggagtgtgttgctacttgg
tggagaccaaactttgaaacagtcatgtacccctactgccctcctcacataacaaaaccg
aaggagtgtaaaaagctttacatggttcacttgcccgagagagaatacttcgctgtacca
aagaatctaaagttattggctgtgcccctgtttgaactttatgataatatccagagatac
gggcccgtgatctctacaatccctcagcagctttcaagattccaattcaacatgatttct
cagtga
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