Silene latifolia (white campion): 141586774
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Entry
141586774 CDS
T11116
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141586774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141586774
03012 Translation factors [BR:
slaf03012
]
141586774
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141586774
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141586774
Translation factors [BR:
slaf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
141586774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
BEX
Rad17
AAA_19
Nop5_56-rel_N_Arc
T2SSE
Motif
Other DBs
NCBI-GeneID:
141586774
NCBI-ProteinID:
XP_074264203
LinkDB
All DBs
Position
6:complement(44093756..44108615)
Genome browser
AA seq
1032 aa
AA seq
DB search
MSLCHFSTTSRSFTIISSPTLSLLKRLTSTFPFSLSSPSCKMSYRPNHQGGRRGAGGRRG
GGGRGGGRGGGGEQRWWDPVWRAQRLAQKAAEYEVMNENEWWNKMEEFNKGGEQEMVIKR
LFNRQDQEILNDMAHQLGLYFHAYNKGKTLVASKVPLPNYRADLDERHGTSQNEIRMSTD
IERRVGSLLDTSKGKNTTESSSNATPRSARTSLSAANIDEPASVSRNNVEKERISLELKQ
KEDKLQTSESVRGMRSFREKLPAFQVRAEFLKSVAQNQVLVVSGETGCGKTTQLPQFILE
KEISLLCGADCNIICTQPRRIAAISVAARISSERGENLGETVGYQIRLETKRSAQTRLLF
CTTGVLLRQLVQDPNLTGVSHLLVDEIHERGMYEDFLLIILKDLLPRRPDLRLILMSATI
NAELFSQYFGDAPTIHIPGLTFPVTELFLEDVLEKIRYNIKSDSDSYQGSSRRRRRQLDS
KKDPLIEQFEELDIASHYKDYSINTRKSLEAWSGSELDLGLVEATMEYICRHEGEGAILV
FLTGWDEISKLLDQVKSNRFLGDTRKYLVLPLHGSMPTVNQREIFDRPPPGTRKIVLATN
IAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASSHQRRGRAGRVQPGVCY
RFYPRKVYDAMPQYQLPEILRTPLQELCLNIKSLQLGSVGSFLAKALQPPDSLSVQNALE
LLKTIGALDDTEELTPLGRHLCTLPLEPNIGKMLLMGSIFQCLNPALTIAAALAYRNPFV
LPIDRKEQADAAKRSFAGDSCSDHIALLKAYEGWKEARHNRTDKTFCWENFLSSQSLQMI
DDMRKQFVDLLSDIGFVNKAKGPQAYNTYSDDMEMVCAILCAGLYPNVVQCKRRGKRTAF
YTKEVGQVDIHPASINAGVHSFPLPYMVYSEKVKTTSIYIRDSTNISDYALLLFGGNLLP
SKTGEGIEMLGGYLHFSSSKSVLELIKKLRAELDKLLNRKIEEPRLDIHAEGKGVVAAVV
ELLNSQNVYKSN
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgtgccacttctcaactacttctcgctctttcaccataatatcttctcccacc
ctctctctcttaaaacgccttacttctacattccccttctctctctcctctccctcttgc
aaaatgtcatatcgccccaatcatcagggcggccgccgcggcgccggaggtcgccgcgga
ggaggaggtcgcggcggcggccgaggtggaggcggagagcagcggtggtgggaccctgtc
tggcgcgctcagcgcctcgctcaaaaagctgctgagtatgaagtgatgaatgaaaacgaa
tggtggaataagatggaggagtttaacaaaggaggagagcaagagatggttattaagcgt
ctatttaatcgccaagatcaggagattcttaacgatatggctcatcaacttggcctttac
ttccatgcatataacaaaggaaagactcttgtcgcaagcaaagttcctttgccaaattat
cgtgcggatctggatgaacgtcatggaacctcacaaaacgagataagaatgtctacagac
attgagagaagagtcggttccttgttggatacctctaagggaaaaaatactactgaaagt
tccagtaatgcaactcctcgcagtgcaagaacttcattatctgcagcaaacatagatgaa
ccagcttctgtatcgaggaataatgttgagaaggagagaatcagtctcgaactcaagcag
aaggaggacaaattgcagaccagtgaaagtgtacgaggcatgagatcattccgggaaaag
cttcctgcttttcaagtgagagctgaatttttgaaatctgttgctcaaaatcaggtgctt
gtcgtctccggcgagaccggctgtggtaaaacaacgcaacttccccagtttattttggaa
aaggaaatctcattgttgtgtggtgccgactgcaatataatatgcacccaaccacgtcgt
atagctgctatatctgttgctgctaggatatcttctgaaagaggagagaatcttggtgaa
acagttggctatcaaatacgtctagagacaaaacgctctgcgcaaactcgtttacttttc
tgcacgaccggagttttattgagacagttggtgcaggatccaaatttgactggtgtgagc
catctcttagttgatgaaattcatgaaagaggaatgtacgaggacttccttcttattatt
ttaaaggatctacttccccgtcgcccagacctgagacttattctcatgagtgctactata
aatgccgagttattttcccaatattttggagatgctcccactattcatataccgggactg
actttcccggttacggaactctttttagaagatgttttggagaaaattcgatacaatatc
aaatcagattctgacagttatcagggtagctcaaggcggcggcgtagacagctggattcc
aaaaaggatcctttaattgaacaatttgaggagcttgatattgcttcccactacaaggat
tatagtatcaatacaaggaaatctcttgaagcttggtctggttcggagcttgacttgggt
cttgtggaagcaacaatggagtatatttgtaggcatgagggtgaaggtgcaattcttgtg
tttctcactggctgggatgaaatttcgaaacttcttgaccaggttaaatcaaacagattt
cttggggataccagaaagtatcttgttcttccccttcatggttcaatgccaaccgtcaat
caacgtgagatatttgaccgaccaccccctggtacaaggaaaattgtgttagcaacaaat
atagcggagagcagtattacaattgatgatgtagtttatgtcattgactgtggaaaggca
aaggagactagctatgatgctttgaacaaacttgcttgtctattgccgtcatggatttcc
aaggcatcatcacatcagagacgaggtcgagctggtcgagttcagcctggtgtttgttat
agattctatccgagaaaagtttatgatgcaatgcctcaatatcaactaccagaaattctc
cggacacccttacaggagctatgcctaaatataaagagcttgcaacttggatctgttgga
tcattcttggcaaaagcacttcagccacctgattctctctcagttcaaaatgctcttgaa
cttttgaaaacgattggtgcgctagacgatacagaagagctaactcctctcggtcgacat
ctttgcactttgcctttggagccaaatatcgggaagatgctcctcatgggatcgatcttc
caatgcctgaatccagctctaaccattgcagctgctcttgcatatcgcaatccctttgtc
cttccaatcgataggaaggaacaagctgatgctgcaaagagatcctttgctggtgattct
tgcagtgaccatatagcgcttctaaaagcatatgaaggatggaaggaagcaagacataac
aggactgataaaacgttctgttgggagaacttcttgtcatcacaatctttacagatgata
gatgacatgagaaagcagttcgtagatctactttccgacataggcttcgtgaataaggca
aagggacctcaagcgtataacacatatagtgatgatatggagatggtgtgtgcaatcctt
tgtgctgggctttacccaaatgttgttcaatgtaaaagaaggggaaagcgaacagcattc
tacaccaaggaagttggacaagttgacattcatcctgcttccataaatgctggggttcac
agtttccccttgccgtatatggtatacagcgaaaaggtgaagacaaccagcatttacatt
cgtgattcaactaatatttcagattacgctcttctgctgtttggcggtaatcttctcccc
agtaaaactggagagggcattgagatgcttggaggctaccttcatttttcttcttcgaaa
agtgttttggaattaattaagaaattgcgagcggagcttgataagcttttgaataggaag
attgaggagccaaggctagacattcatgctgaaggaaaaggggtggttgctgctgtagtc
gagctgcttaacagtcaaaatgtatacaagtccaactga
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