Silene latifolia (white campion): 141587179
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Entry
141587179 CDS
T11116
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03013
Nucleocytoplasmic transport
slaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141587179
03015 mRNA surveillance pathway
141587179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141587179
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141587179
5.6.2.5 RNA 5'-3' helicase
141587179
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141587179
mRNA cycle factors
Common to processing body (P body) and stress granule
141587179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
NPHP3_N
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
141587179
NCBI-ProteinID:
XP_074264721
LinkDB
All DBs
Position
6:121179687..121196407
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AA seq
1266 aa
AA seq
DB search
MDSQSSNLFETASQPDTGADAYTFLEFNTQVGVPDDAEDFSSYPQFNELSQPSIHAVTPT
ASSPPPANADASTPAASSSSAVSSGGRSKARGGAAVVESLAAGMSGLNFDDTVGDEIDGF
VDEFGKGDFKEHACRYCGVANPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSANALKDMNWDLS
QWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQLINKIEELWKTNPDASFEDLEKPGVDN
EPQPVAIKYDDAYQYQNVFAPLIKLEADYDKMMKESQTKNNLTVRWDIGLNKKRVAYFVF
PKEDNELRLVPGDELRLCYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHG
FSVDFVWKSTSFDRMQSAMKTFAVDETSVSGYIYHHLLGHEVEMQLVRNTLPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC
LIPLVLGVKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHP
ALSEFPSNNFYEGTLQNGVTINERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN
GLLTHYKDHECLVEGPLSNLKQSMVQFQKPKKIYNDRRLFYGAAAGIPNNDFAPISASGA
NADRRSGRARGYMPQGPPNGSHKPGVHPTGFPMPLVPLHPYHGAPPAQPYAIPARAVHGP
VGAVPQVPQPGGRGFGAGRGSAAPIGSHLPHQQGSQQPIGNVGPSFNFPPESPNSQQSVG
GPLSQPGFVSNGPNQSFRDGFSLGGLSQDFLGDDFKSQGSHVSYNIAEFSTQASQSGYSV
DYATQGAQSGFPASYLNQNSQAGFSRFGGGNDFMSQDYMAHGSQGLFTQVGFPDPSQEDT
SQGHFGAGNASHLQSQALMNPLYPHSFPHYNTQPSNLHNEPPQPQAQAQPNQHGQSFQNH
KGQYSG
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggattcacaatcaagcaatctattcgaaacggcgtcgcagcccgacacaggtgccgac
gcctacactttccttgaattcaacactcaagtcggtgttcccgacgacgccgaagatttc
tcatcatatcctcagttcaacgagctttctcagccgtcgatccatgccgttactccaacg
gcatcatctcctccccctgccaacgccgatgcgtctacgcccgcggcttcatcgtcatct
gccgtgtccagcggcggacgctcgaaggcgcgtggtggcgcggcggttgttgaatcgctt
gcagccgggatgagcgggttgaattttgatgatacggtcggggatgagattgatggtttc
gtggacgagttcgggaaaggggattttaaggagcatgcgtgtcggtattgcggtgttgct
aatccggcttgtgttgttcggtgtaatgtaccgtcttgtcgaaagtggttctgtaattct
cgcgggaatacttctggctctcacattgtcaatcatttggttcgagcaaagcataaggaa
gtttgtttacacaaagatagtcctttaggagaaacaattcttgaatgttacaactgtggg
tgtcgtaatgttttcctacttggatttatttctgctaagacagaaagtgtagttgttctt
ctttgccgggagccttgcttgagtgctaatgcactcaaggacatgaattgggatttgagt
caatggtgtcctcttattgatgatcgctgctttcttccgtggcttgtcaaggtcccatct
gaacaggagcaactgagggccagacaaattagtgcacaactgataaataagatagaagaa
ctgtggaaaacaaatccagatgcatcttttgaggatcttgagaagcccggtgttgataat
gaaccacagcctgttgccataaaatacgatgatgcttatcagtatcaaaatgtctttgct
ccacttatcaaacttgaagctgactatgacaagatgatgaaagaatctcaaactaagaat
aatctaacagttcggtgggatattggactgaacaagaagcgtgttgcgtattttgttttc
cccaaggaggataatgaattgcgtctcgttcctggtgatgagttgcggctatgttattca
ggagatgctgctcatcctgcttggcagtcagttgggcatgtgataaagttaacagcacag
gaggaggttgcactggagttacgagcaagtcagggagttccagtagatataaatcatggt
ttcagtgttgattttgtctggaagagtacaagctttgatcgcatgcagagtgcaatgaaa
acttttgcagtggatgagactagtgttagtggatatatttaccaccatttgttgggccat
gaagttgagatgcagctggtacgaaatactttgccacgtagattcggtgctccaggcctt
ccagaacttaatgcttcacaggtttttgcagtaaagagcgtcctccaaaagcccataagt
ttgattcaaggtccccctggcacaggcaaaactgttacttctgctgcaatcgtttatcac
atggctaaacaaggacaagggcaggttttggtctgtgcgccaagtaatgtggctgtagat
caactggctgaaaagataagtgccactggcttaaaggtagtgaggctctgtgctaagtca
agggaggctgttagttcccctgttgagcatctgacacttcattatcaggtccggcacctt
gacacttctgagaagagtgaactgcacaagctacaacaactgaaggatgaacaaggagaa
ttatcaagtagtgatgagaaaaagtacaaagctttgaagcgagcaacagagcgggagata
gctcagagtgctgatgtcatatgttgtacttgcgtcggagctggtgatccccgccttgct
aactttaggttccggcaggtactaattgatgagtccactcaagctacagaacctgagtgt
cttattccactggtgcttggagttaagcaggctgttcttgtgggtgaccactgtcaactt
ggtcctgtaataatgtgcaagaaggctgctcgagctggattggcgcaatctctctttgaa
cgtctcgtcttacttggcgtgaaacctattagattgcaggttcaatatcgtatgcatcca
gcactatcagaatttccttccaacaacttttatgaagggacacttcagaatggcgtcaca
attaatgagaggcaaacaacaggcattgatttcccatggcccgttccaaaccgccccatg
ttcttttatgtccagatggggcaagaggagattagcgctagcggaacttcctatcttaat
cgtacggaggctgcaaatgttgagaaaatagtgactaccttcttaagaagtggagtagtt
cctagtcagattggggtaataacaccgtacgagggccagcgggcatatatcgtgaactat
atgtcaaggaatggtgctcttagacagcaactttacaaggaaattgaggtggcaagtgtt
gattcattccaaggaagagaaaaggattacattattttatcctgtgtcaggagtaatgaa
catcagggcatcggatttctcaatgatcctcgtcggctcaatgtggctttgacaagagct
cgttatgggattgtcatcttagggaatcccaaagttttgagcaagcaaccactctggaat
ggtttactcacacactacaaggatcacgagtgcctggtggaaggacctctcagtaacttg
aagcaaagtatggttcaatttcaaaaaccaaagaagatctacaacgatcgtcgactattc
tatggtgcagccgctggtatacccaataatgattttgcaccaatttcagcaagcggtgca
aatgctgatagaagaagtggtcgtgctcgagggtatatgccacaaggaccacccaatggt
agtcacaagccaggagtacatcccactggatttccaatgcctctagttccccttcatcct
tatcatggagcaccaccggctcaaccatatgctattcctgctcgagctgtgcatggtcct
gttggagctgttcctcaagtaccccagcctggtggccgtggctttggtgctggccgaggt
agtgctgctcctattggcagtcaccttcctcaccagcagggctcacaacagcctattgga
aatgttgggcctagcttcaactttcccccagaaagtcctaatagccaacagtccgttggt
ggtccattgtcacaacccggctttgtttctaatgggcctaaccaatctttccgtgatgga
ttctctctagggggattgtcacaggacttcttgggggatgattttaagagtcaaggatcc
catgtttcttacaatattgccgagttctcaacacaggcttcacaaagtggatattcagtt
gattatgccacccaaggagcgcaatctggatttcctgctagctacttgaaccaaaactct
caggctggattttctcgttttggtggcgggaatgattttatgtctcaggactatatggct
catggatcgcagggactttttacccaagttggcttccctgatccgtctcaagaagacact
tctcagggccattttggtgctgggaatgctagtcaccttcaatcacaggccttgatgaac
cctctgtatcctcactcctttccacactacaacacacagccatcaaacttgcataatgag
ccgcctcaaccgcaggctcaggcccagcctaaccagcatggtcaaagctttcagaaccac
aagggccaatacagtggttga
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