Silene latifolia (white campion): 141590857
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Entry
141590857 CDS
T11116
Name
(RefSeq) putative pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf00040
Pentose and glucuronate interconversions
slaf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
141590857
Enzymes [BR:
slaf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
141590857
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
FinO_N
Motif
Other DBs
NCBI-GeneID:
141590857
NCBI-ProteinID:
XP_074267485
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Position
7:complement(8305710..8307550)
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AA seq
377 aa
AA seq
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MANHSSIRLFVMFSIILAVQTMSSLAQKPALSKLNAIDVCWRRNPKWKVQRQQMARCSVG
FAGKMTNNIGKGTIRYVVTDPSDDPLKPKPGTLRYGVSMLPGRVWITFQKDMNIKLERTL
VVGSFTTIDGRGASIHISRGGCILLYKVTDVIIHGLRIHHCRAQPAGSVMGPGAKLMQLS
KMDGDAIRLLASTKVWIDHNTLYKCEDGLIDVTLGSTNITISNNWFREHDKVMLLGHDDD
FKDDKNMKVTVVYNRFGPNCHQRMPRVRHGYAHVVNNLYLGWELYAIGGSMNPSIKSESN
LFVAPSENKEVTRKINQENGKEWNFKSVGDILENGASFKDTGSGYVKPCYNSEQVFKVEN
AIFVRQLTRSAGALTLQ
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggctaatcattcatccattcgtttgttcgttatgttttcaataatacttgctgtacaa
accatgtcgtctttagctcaaaaaccagcactctcgaaactgaatgctattgatgtttgt
tggcggcgcaaccctaaatggaaagtgcaacgacaacaaatggcaagatgttcggtggga
tttgcagggaagatgaccaataacattggtaaagggacaattaggtatgttgttactgac
cctagtgatgaccctttgaagcctaagccgggaactcttcgatatggtgttagtatgcta
ccgggaagagtatggatcacatttcaaaaggatatgaatatcaagcttgaaaggactttg
gttgttggaagcttcacaactattgatggtcgaggcgctagtattcacatttcaaggggt
ggttgcatcttgctctataaggtgactgatgtgataatccatgggttacgaatccaccat
tgtcgagctcagcctgctgggtcggtaatgggaccaggggcgaagttgatgcagctaagc
aagatggatggggatgcgataaggctacttgcgtcaacaaaggtatggatagaccataac
acgctatacaaatgcgaggacggccttattgatgtaactcttggctcaaccaacattacc
atttccaataactggtttagggagcatgacaaagtcatgctccttggtcacgacgatgat
tttaaggacgacaaaaatatgaaggtcactgtcgtgtataaccgatttgggcctaactgt
caccagcgcatgccaagggttcgtcatggatatgcacacgtcgttaataatctttactta
ggatgggaactgtatgcaattggagggagtatgaatccaagcataaagagcgagtctaac
ttgtttgtcgcgccatctgagaataaagaggtaacaaggaagatcaaccaggaaaacgga
aaagaatggaatttcaaatcagtaggagatattctagaaaacggagcctcattcaaggac
acaggatcgggatatgtaaaaccatgttacaacagcgaacaagtttttaaagtcgagaat
gcgatttttgtcagacaactcaccagatctgcaggcgccttaacgctgcagtag
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