Silene latifolia (white campion): 141591468
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Entry
141591468 CDS
T11116
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
141591468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141591468
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
141591468
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
141591468
NCBI-ProteinID:
XP_074267911
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Position
1:318761..332283
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AA seq
1303 aa
AA seq
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MAPSRKLANGRSPLITKQHQITSFFTKSPINPLLSSIPQSKTPNPNPNLVASPNSSPPTT
PSPLNGKLRPKSMPKPVLVIGSNKQLEDSFGEEVVSRRIRVYWPLDKEWYEGCVKAYDKS
VGKHLVEYDDADEELIDLSKEKIQWIEDGGSRVRKFRRLRKAVSVTVVEDKEEDVEEGTV
GGEMVEDDDSSDEDWGKGENVGSGEEADAEIEEEDFMEEVELVEEKTVRTERLKRKRGEG
GGDGGVGKSCKEDGGENVDMSVRKKKSGFLVTEFGTKLEKVIASVQGKETKPTNVVDSMD
TDALERFGIREEKKLPFLGKDRRDAKRRLPSDPHYDPKTLYLSLQFLKSLTSGQRQWWEF
KSKHMDKVMFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPEKNFSVNVEKLARK
GYRVLVVEQTETPDQLEIRNKKEGSKDKVVKREICAIVSKGTFTEGELSTNVDASYIISV
TERCPASPDNKQELVYGVCVVDVATSRVIVGQMKDDVECSALCCLLSELRPVEVIKPANM
LSLETERALTRYTRNPLVNELVPGLEFWGADKTVGELKSFYSCIRRPSVSSDKTPEAVSN
FGMDDDSCELPDVIKELLTAGDDGSLALSAFGGSLYYLKQAFLDQALLRYAKFEPLPCFG
FRDVLQKPYMVLDAAAMENLELFENSRNGGSTGTLYSHLNHCATAFGRRLLKTWLARPLY
DVQSIRERQDAVDGLRGNNLPFALEFRAKLAKLPDMEKLLSRLFSSSEANGRNSNKIILY
EDAAKKQLQEFISALRGCEIMALACSSLGSILDNTESELLHRLLVPGKELPDVSSTSQQF
RDAFDWVEANSSGRVIPHEGVDAVYDITCKKIEEIESNLEKHIIEQRKVIGDKSIKYVIV
GKDKYLLEMSESLSRSVPRDYELRSSKKGFSRYWSPYIKKMVGELAQAESVKESHLKGIL
QDLIERFCKHHTMWRRLVTVVAELDALVSLVIASDYYEGPTCRPSVSKASNSSDVPHLIA
ESLGHPLLKSDTLSRGAFVPNDINIGGPDQATFVLLTGPNMGGKSTLIRQICLAVILAQV
GADVPAQHFKLSLVDRIFVRMGAKDHIMAGQSTFLTELSETASMLTSATRDSLVALDELG
RGTSTSDGQAIAESVLEHFVREVQCRGMFSTHYHRLAINYERDPKVSLCHMACQVGEGNG
GLEEVTFLYRLTLGACPKSYGVNVARIAGIPDCVLHKAAAKSREFEMAFGRHSKRPYKNV
SSWEEEAASFIQNLVGITSHADLQEIASFSQLQRKARILLEQC
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggcgccttcacgtaaactcgccaatggcagatcaccattaatcactaaacaacaccaa
atcacctccttcttcactaaatccccaattaatccacttctttcatcaattccccaatcg
aaaacccctaaccctaaccctaatttagttgctagtcccaattcatcaccgccgacaact
ccgtctcctctaaacggcaaattgcgacccaaatccatgcccaaacccgtattagttatc
gggtcgaataagcaattggaagattcatttggggaagaggttgtgagtaggaggattagg
gtttactggccgttggataaggagtggtatgaagggtgtgtgaaggcgtatgataagagt
gtagggaagcatttagtggagtatgatgatgctgatgaggagttgattgatcttagtaaa
gagaagattcagtggattgaggatggtgggagtcgtgttaggaagtttaggaggttgagg
aaggcggtatcggttacggttgtcgaagacaaggaggaggatgtggaggaggggactgtg
ggtggcgagatggttgaggatgatgattcgagcgatgaggattggggtaagggtgagaat
gtgggaagtggcgaggaggcggatgcggagatagaggaggaggatttcatggaggaggtg
gaattggtggaagagaagacggttaggacggagaggttgaaaaggaagcggggagaaggt
ggtggagatggaggtgtgggaaaaagttgtaaggaggacggtggagagaatgtggatatg
agtgttaggaagaagaaaagcgggtttttggttacggaatttggtacgaagctggagaag
gtgattgctagtgttcaaggtaaagagacaaaacctaccaatgttgttgacagcatggac
actgatgctcttgagaggtttggtattcgtgaggagaaaaagttgccattcctgggcaaa
gatcgccgggatgcgaagaggagactcccaagtgatccacattatgatccgaaaaccctt
tacttgtcccttcaatttctgaaaagtcttactagcggtcagcgacaatggtgggagttt
aaatcaaagcatatggacaaagttatgttctttaagatgggcaaattttacgagcttttc
gaaatggatgcccatgttggtgtgaaagaacttgatcttcagtacatgaagggagaacag
cctcattgcgggttcccagaaaagaatttttcagttaatgtggagaaactagcaagaaag
ggctatcgagtattagtagtggagcaaacggaaacacctgatcagctggagatccgtaac
aaaaaggaaggttcaaaagataaggtggtcaaacgagaaatatgtgccattgtgtccaaa
ggaaccttcactgaaggagaattgtctacaaatgtggatgcatcgtacataatctcagtg
actgaaagatgcccagcctctccagataataaacaagagcttgtgtatggtgtttgtgtt
gttgatgttgctacaagccgcgtaattgttggccagatgaaggatgatgtggaatgcagt
gctttgtgctgccttctctcagaattaaggccagttgaagttataaaacctgctaatatg
cttagccttgagactgaaagggcactcaccagatacacaagaaatcctctcgttaatgag
ttggttccaggtctggaattttggggagctgacaaaacagttggcgagttgaaaagcttc
tacagttgcatccgtagaccctctgtttcttctgataaaactccagaggcagtctccaac
tttggtatggacgatgattcatgtgagcttcctgatgtaattaaggagcttctgactgct
ggggatgatggtagtcttgcgctgtcagcttttggaggcagtctttactatctgaaacag
gctttccttgatcaggctttgctccggtatgctaaatttgagccactaccatgttttgga
ttccgggatgttcttcaaaaaccgtatatggtattagatgcggctgccatggagaacttg
gaattatttgagaacagtagaaatgggggctccacagggactctgtattcccatctcaat
cattgtgcaactgcattcgggaggaggttactgaaaacatggcttgcaagacccttatat
gatgttcagtcaattagagaacgacaagatgctgtagatgggcttcgaggcaataattta
ccatttgctcttgaatttcgggccaagttggccaagttgcctgacatggagaaattgctt
tctcgcctcttttctagcagtgaagcgaatggaagaaattcaaacaagattattctttat
gaagatgctgcaaagaaacagcttcaagaattcatttcagcattacgtggatgtgaaata
atggccttggcttgctcttctctgggttctattttggataatactgagtctgaattgtta
caccgtctgttagttcctggcaaagaacttcctgatgtgagttctacttcacagcaattt
agagatgcctttgattgggtagaagctaacagctcaggtcgtgttatacctcacgaagga
gttgatgcagtgtacgatattacctgtaaaaagattgaggagatcgaatctaatctagag
aagcatatcattgaacaaagaaaagtaatcggtgataaatcgatcaagtacgtgattgtg
ggaaaggacaaataccttttagaaatgtctgaaagcttatccagaagtgttcctcgggat
tatgagctgcgatcatccaagaaggggttttccaggtattggtcgccgtatattaagaag
atggtaggagagctggcgcaagctgaatctgtgaaagaatctcacttaaaagggattttg
caagatttaattgaacgtttttgtaagcatcatacaatgtggagaaggctggttacagtt
gttgcagaattagatgctctcgtcagcttggtgattgcaagtgattactatgaaggaccc
acatgccgaccaagtgtttcaaaagcgtccaatagtagtgatgtgcctcatttgatagcg
gaaagtttagggcaccctctcctaaagagcgatacgttaagcaggggcgcatttgttcct
aatgacattaatatcggtggccctgatcaagccacctttgtcttgcttactggtcctaac
atgggtggaaaatcaacccttattcgccaaatttgcctggctgtaattttagctcaggta
ggagctgatgttcctgcacaacactttaagctatctcttgttgatcggatttttgttcgc
atgggagctaaagatcacattatggctggtcagagtacttttctaacagagctttcagaa
actgcttccatgttgacatctgctacccgtgattcactggtggcattggatgaacttgga
cgtggaacttcaacttcagatggacaagctattgcggaatcagtccttgaacattttgtg
cgggaagtacagtgtcgtggcatgttttccactcattatcaccgattagcaataaattat
gaaagagatcccaaggtatctctatgtcatatggcttgtcaagtaggagaaggaaatggt
ggtttggaagaagtcacattcctctacaggctgactcttggagcatgtcctaaaagctac
ggtgtcaatgttgcacggatagcgggaattcctgactgtgtactacacaaagctgctgcc
aagtcgagagaattcgagatggcttttggcaggcacagcaagagaccttataaaaatgtc
tcgagttgggaggaagaagctgctagtttcatccaaaatctggttggaattacgtcacac
gctgatttgcaagagattgcctcatttagtcagcttcaacgcaaagctaggattcttttg
gagcaatgttga
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