Silene latifolia (white campion): 141591944
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Entry
141591944 CDS
T11116
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141591944
09123 Folding, sorting and degradation
03018 RNA degradation
141591944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141591944
03041 Spliceosome [BR:
slaf03041
]
141591944
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141591944
mRNA degradation factors
5'-3' decay
Lsm complex
141591944
Spliceosome [BR:
slaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
141591944
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
141591944
NCBI-ProteinID:
XP_074268562
LinkDB
All DBs
Position
7:23342925..23347439
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AA seq
144 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKIRSDRRPPGVGRGRGRGREEGPGRQQKGIGRGMDDGG
KGAGGRGRGASIGKPSGKAGGRGR
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctatcgctgttgaagaccgctcaaggtcaccctatgttggtagaattgaag
aatggagagacatataatgggcatttggtaaattgtgatacttggatgaatattcatctt
cgtgaagttatctgtacttctaaggacggagaccggttttggagaatgcctgaatgttat
atcagggggaacactatcaagtatcttcgagttcccgatgaggtcattgataaagtgcaa
gaggagaagatccgttcagacaggaggccacctggggtaggacgtggaagaggaagaggt
agggaagaaggtcctggaaggcagcagaaaggcattggacgtggtatggatgatggtggt
aaaggtgctggaggccgaggccgtggtgcttctattgggaagcctagtggaaaagctggt
ggacgagggcgttga
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