Silene latifolia (white campion): 141592137
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Entry
141592137 CDS
T11116
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03013
Nucleocytoplasmic transport
slaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141592137
03015 mRNA surveillance pathway
141592137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141592137
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141592137
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141592137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
IFT52_central
Motif
Other DBs
NCBI-GeneID:
141592137
NCBI-ProteinID:
XP_074268820
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All DBs
Position
7:complement(47230094..47235295)
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AA seq
511 aa
AA seq
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MGDITTTAADITTTATDNSTSASTSTTANDNSASASTSWTAEVRRSWGDVADEEDEELSK
SALAADQVVPDVEQLSINDRTDLDDPHDSNIHAETTGDTPYTSAKKFEDLNLSEDLLKGL
YVEMRFERPSKIQAITLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPNLNAPQAL
CICPTRELAVQNMEVLTRMGRYTGITAERALPDDRDNLAHTPISKRPPLTTQVIIGTTGT
IKKWVSNKKLSLRSMKILVFDEADHMLAQDGFKDDSMRIMKEMEKVGANCQVLLFSATFN
EEVKNFVTKTIQGYNQLFVKKEELSLDSVKQYKVSCPDELAKVQVIKDKILELGQKLGQT
IIFVRTRASAGSLHKALVDLGYEVTTIQGALNNEDRDKIVKEFKDGLTKVLISTDVLARG
FDQSQVNLVVNYDLPVKYRQWLEPDYEVYLHRVGRAGRFGRKGAVFNLVCDDRDKTLMEK
IEQYFGTTIAQVPSYESDKDFEAALNEAGLL
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacataaccaccacagccgccgacataaccaccacagccaccgacaactcgaca
tcagcgtcaacatcgaccactgccaacgacaactcggcatcagcgtcaacatcatggaca
gcagaagtaaggcggtcgtggggtgacgtagccgatgaggaagacgaagagctttctaag
tccgccctcgctgccgaccaagtagttcctgatgtcgaacaactctctattaatgaccgc
actgatttagatgatcctcatgattccaatatccatgcggaaactacaggagatactccg
tacacttcagcaaagaaattcgaggatctgaatttgtcggaggatttgcttaagggcttg
tacgtagagatgagatttgagaggccaagtaaaattcaagctattactttgcctatgatt
ttaacacctccatataaaaatttgatcgctcaagctcataatggatctgggaaaaccact
tgttttgttcttgggatgttgagccgtattgatcctaacttgaatgctcctcaagcgctt
tgcatttgccctactcgagaattggccgttcagaacatggaggtgctcacgagaatgggc
aggtatactgggataactgcagaacgagctctcccagacgatcgtgacaacctagctcat
actcctattagcaagcgaccccctctgacaacccaagtgataattgggaccactggtact
attaagaagtgggtttccaataaaaagttgtctctgcgttccatgaaaatccttgttttt
gatgaggccgatcacatgttagctcaggacggcttcaaggatgattcaatgaggattatg
aaggaaatggagaaagttggtgcaaactgtcaggtgctcctattttcagccaccttcaat
gaagaggtgaagaactttgtaacaaagacaatccaaggttacaatcagctttttgtcaag
aaggaagagttgtcactggattcggtgaagcagtataaggtttcctgccctgatgagttg
gctaaagttcaagttattaaagacaaaattttggaattggggcaaaaactggggcagacc
attatatttgtccgcacaagagctagtgcagggagccttcataaggcgcttgttgatttg
ggttatgaagtaactacaatccaaggtgccctaaacaatgaagacagagacaaaattgtc
aaggagttcaaagatgggttaactaaagtcctgatatcaacggatgttttagcaagaggc
tttgaccaatcacaggtcaatttggtggtcaactatgatctacctgtgaagtatcgtcag
tggttagagcctgactatgaggtatatttgcatagagttggacgggcaggacggtttggg
cgtaaaggagctgtatttaatttggtatgtgatgacagagacaaaacgttgatggagaag
attgagcagtatttcggaactacaatagctcaggtaccatcatatgagagtgataaagat
tttgaagctgctcttaatgaagcgggtctgctataa
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