Silene latifolia (white campion): 141592474
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Entry
141592474 CDS
T11116
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slaf03009
]
141592474
04121 Ubiquitin system [BR:
slaf04121
]
141592474
Enzymes [BR:
slaf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141592474
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
141592474
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141592474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
UBC_like
LTN1_E3_ligase_6th
zf-RING_2
HEAT_GCN1
zf-rbx1
FANCL_C
zf-ANAPC11
zf-RING_16
zf-C3HC4
zf-C3HC4_2
MMS19_N
RINGv
zf-RING-like
IBR_1
C1_1
Motif
Other DBs
NCBI-GeneID:
141592474
NCBI-ProteinID:
XP_074269259
LinkDB
All DBs
Position
7:complement(106083869..106103455)
Genome browser
AA seq
1889 aa
AA seq
DB search
MGKQKGESGRTKARASSSSLAASLVPVGTPQIGFGGYLGSTRVDSALHAEESGSFKGVDG
EMVQYLKRLARRDPTTKLKALNSLAALLKDKSGKDVVLIIPQWGFEYRRLLMDYNREVRR
ATHETMTSLVTAAGRELAVHLKSLMGPWWFGQFDSVSEVSVAAKRSLQVAFPSHEKRLDA
LMFCTSEVFEYLGDNLKLTPQSMADLAVASDELTEMHQRVISSSLLALATLIDVLLGLKS
AKVSSDESNNLPKNALKAQDVAISSAKSLMSAHRNFQDFLKSHDSVVRTATYTVLRSFVK
NIPEVIGEEDVKALSPAILGALQEKDPSCHTALWETILFFCKRFPQSWSSINFQKTFSNR
FWQFLRNGCFGSQLVSYPAFVLLLDALPPEIVGLQFFIDFFQNLWAGRDASHPSSADRLA
FFLTLKECFLWVLNNASRYCKQEDVSSFRFSLLDNIIVKLLWHNFLSDSETRHGEIVESG
KNDDAFSEIPKLLDSHLFEIRQGHLHDTGECIINILSGIYPLDCQLLVLFCEAFQENCLK
ALQQTVHADETSYNLMQINRFIVMVGKYAISKSESWPLEFLAGPLLEKTLSLIISADSAD
AVNFLLVMVSIFGPKKTIQKIISSEETASGIGADVTDGVNREPNKFLNAFERTFVHWCFM
GNESLVDSRMNVLLALLDEECFTEQWDTIISYAAIAGTSHVGRLATLIQKVRSLTRQRSR
VHNNKIFQISCWQHEKLDSVAFSVMLSAPESLDSHVKFIRAVLGGSMEDDDVSFLSKNAT
VHVYERAFDELVAFIMESPFACVRKFGSLSRSLVNSSTSEIKHNVDVGHLAKRAYFALEV
LSSSTFTLKSYCKESELLLGAAGVMFVIDWDCCLSQLLGTELKNCSQDHMMAREKFGRAM
HEFRTSIDKQFWRSFPAQFRAKLGSLLVQFNRSSIFVDDTFDTSVVTSLCCKWIVEVCEC
LCVSQLEEQNLIDKLLGSDDLWPLWIMPANSTNKEKITLRLEHAPTDVPVFRTHEFVALI
DKLILEIGVAKMFVAFNPHPTATEEGQSENYELAASQSKSFRAWLVAEMFCTWKWPGGSA
LGTLLPSLISYVKSEQGGESSFVFDSVLNILLKGALICGINGQLRFFNTCPPSNKDLDEI
EEPFLRALVSLLATLLNEGIWNQEQAIEFWQLLISDLYTGQETNINCLRILPLLVPVLAQ
FLHESGGSKDMVIDSLPISFREDVQDWLGKTLAFPSLISWTSDEDIKEWFHLALSCFPLR
RTEDMHQLKLHPSSLETKHLLDLFRKQRHDASLSIVSNSLPVVPVLLSRLMVIVVGYCWK
ELDEEEWRYILSHWRSWTELVVTTMEEAAESLDIENGDNLEVTVSKVEQLMHNLDSSLVN
IAINALYGFSYLMELSKCHPSDQTESLTFCTSEVCQFTIDQIQEGVLRIFFSAGISEAIS
DLLSCEGLSIISRSHATCPQFWNLVARTVINSSMSSREKAFKAVELWGLKTNVISSLMSI
LFSSKLVSTVQFASFVLLSSAPLSSSAIMKENVLDSLPGTSTSVSVSDNLDLLAESNLLR
DEIHRLLCTSPAEILDQDLEAQERVQVFLAWSLVLTYLASLPASSSKREKLVQEIQESAS
SAILDCLFQHIPFELAVTNGMKKKDSDLPAELEDIATAATRAIRTGSVLFVVECLWPVRP
QSLSLLASAIFGLMLHVLPAFVRVWFTSLRVRSASSAIESFTKTWCSPHLVSDELSQIKK
SDFVDECFSVSVSKSANEVVATYTKEETGMDLVIRLPVSYPLRPVDVECTRSLGISEVKQ
RKWLLSLMAFVQNKNGALAEAIRIWKSNFDKEFEGVEECPICYSVIHTSNHSLPRLACKT
CKHKFHAACLYKWFSTSHKSNCPLCQSPF
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaacaaaagggtgaaagtggaagaaccaaagctcgtgcatccagcagcagtctt
gctgcctcacttgttcctgtgggcacacctcaaattgggtttggtggttatttgggcagt
actcgggttgattctgctcttcatgccgaggaatccggttcttttaagggtgttgatggt
gagatggtgcaatacttgaaaagacttgctagaagagaccctactacaaagcttaaagct
ttaaattctctagcggcactactgaaggacaagtctgggaaggatgttgtactgattatt
ccacaatggggttttgaatataggaggcttttgatggattataacagagaagttcgacgt
gcaacccacgagactatgaccagcctcgtcactgcagctggacgggagttggcagtgcat
cttaagtctctcatgggaccatggtggtttggtcagtttgattcagtctcggaagtatcg
gtagctgctaagcggtcactgcaggttgcctttccatctcacgaaaagagactggatgca
ctgatgttctgcacgtcggaagtgttcgagtatttgggtgataatttaaagctgacaccg
cagagtatggctgatcttgctgtcgcttctgacgagttgacagaaatgcatcaacgagtt
atttcatcatcattattggctcttgctactctaattgatgttttactgggattaaaatct
gctaaagtcagctctgatgagtcaaacaacctaccaaagaatgctctgaaagcccaggat
gttgcaatttcttctgcaaaaagcttgatgtctgctcatcgtaacttccaagattttttg
aaatctcatgattccgttgttcggacagctacatatacagtattgcgaagtttcgtcaag
aatattcccgaggttattggtgaagaagatgtgaaagctctttcacctgctatactgggt
gctcttcaagaaaaggacccatcgtgtcacacagcattgtgggaaacaattctgtttttc
tgcaaacgtttccctcaaagttggtcttctataaattttcaaaaaacattttcaaatcgc
ttttggcagttcctcagaaacggctgctttggctcacagctggtctcgtaccctgcattt
gtccttttactagatgctttacccccagaaatagttggactgcagttctttattgacttt
ttccagaatctgtgggcgggaagagatgcatctcatcctagtagtgctgatcgcttggca
ttcttccttaccctgaaagagtgtttcctttgggtcttaaataatgcatcaagatattgt
aaacaagaagatgtttcctcttttcgtttttctcttcttgacaacataattgtgaagctt
ttgtggcacaatttcttgtctgactctgagacaagacatggagagatagttgaatctggt
aaaaatgatgatgctttttcagagataccgaaattgctagatagtcatctattcgagata
aggcaagggcatttgcatgatacaggggaatgtattatcaatattctttctggtatctac
cctttagattgtcaactgctcgttctgttctgtgaagcatttcaggaaaactgccttaag
gcgttgcagcaaacagttcatgcagatgaaactagttacaatctaatgcaaattaatcgg
tttatagtcatggtgggaaagtatgcaatttcaaaatctgaaagctggcctctagagttt
ctggctggacctcttttggagaaaactctgtcactaattatatctgcggattcagcagat
gcagtaaactttctactagtcatggtttctatttttggacccaaaaaaaccatacagaaa
attatttctagtgaggagactgctagtgggatcggtgctgatgtcactgatggggtcaat
agagaacccaacaaatttctgaatgcttttgagagaacatttgtacattggtgttttatg
ggaaatgagagtttagttgattcccgaatgaatgttttgcttgcattgctagatgaggag
tgttttactgagcaatgggataccattatctcatatgctgccattgctggtacatctcac
gttggaaggttggctactcttattcaaaaagtaaggagtttgacaaggcaaagatcaaga
gtccataacaacaaaattttccaaatttcgtgctggcagcatgagaagctggattcagtt
gcattttctgttatgttgagtgctcctgagtcgctagattctcatgtgaagttcatacga
gctgtccttggtggttccatggaagatgatgatgtatcttttctttccaaaaatgcgact
gttcatgtttacgagagagcatttgatgagttagtagctttcattatggagtctcctttt
gcttgcgtcaggaaattcggttcattatcacgttctctagtgaactcttctacatcagaa
ataaaacataatgtagatgtgggacatttggctaagagggcttactttgctcttgaggtt
cttagtagtagcacttttaccttgaagtcatattgcaaggagagtgagttgctcctaggc
gctgcaggtgttatgtttgtaattgactgggactgctgtttatcgcaattattaggcacc
gagttaaagaattgttcccaggatcatatgatggcaagggagaagtttggtagagctatg
cacgaattccgtactagcattgacaaacaattctggagaagttttccggcacaatttcgt
gctaaactagggagccttcttgttcagtttaataggtcctctatttttgtggacgacaca
tttgatactagtgtagtaacgtctttatgctgcaagtggatcgttgaagtttgtgaatgt
ctgtgtgtaagtcaattagaggagcaaaatttaatcgacaagcttttaggcagtgatgac
ttatggccactgtggatcatgccagctaacagcacaaacaaagagaaaattactctcaga
cttgagcatgcacctactgatgttcctgtatttcggactcatgaatttgttgctctgata
gacaaacttattttggaaattggtgtcgctaaaatgtttgttgcatttaatccacatcct
acagctacagaagagggtcaaagcgaaaattacgagcttgctgcttctcagtctaagtct
ttccgagcttggctcgtggctgaaatgttctgtacttggaaatggcctggcggtagtgct
ttagggacacttttgccttctttgatctcttatgtgaaaagtgaacaagggggagagtca
agttttgtgtttgactcagtattgaacattttgcttaagggtgctcttatctgcgggata
aatgggcagttaaggttttttaatacgtgcccaccttcaaataaagatcttgatgagatt
gaggaacctttcttgagagcccttgtgtctttactcgccactttgttaaatgaaggaata
tggaaccaggagcaagctattgagttctggcaattgctaatatctgacctttatacggga
caagaaacaaacataaattgtctgaggattcttccgcttcttgtgcctgttcttgcacaa
ttcttgcacgagagtggaggatccaaagacatggtcatagattccctgcctatttcattt
agagaagatgttcaggattggcttggaaagactctggcattcccatctctaatatcatgg
acttctgatgaagatataaaagaatggttccatctggctttatcatgtttccctttaaga
agaacagaagacatgcaccagttgaaactgcatccaagctctttggagacgaaacattta
cttgatttgttccgtaagcaaaggcatgatgctagcttgtcaattgttagtaattcattg
ccagtggtaccggtattgctgtcacgtttgatggttatcgtagtaggatactgctggaag
gaattggatgaagaagagtggagatatatattatctcactggaggagctggactgagtta
gtagttacaactatggaagaagctgcggaaagcttggacattgaaaatggtgataattta
gaggttacagtcagcaaagtagagcaactcatgcataatttggattcttctctggtgaat
atagcaataaatgctctttatggtttttcttatctaatggagctgagtaaatgccatcca
tcggaccaaactgagagtttaacattctgcacttcagaagtatgccaatttacaattgat
cagattcaagagggggttctccgaatattcttctcagctggcatttcagaagctatttca
gatttgttatcctgtgagggtctctccatcatatctagaagccatgctacgtgtccacag
ttctggaacttggttgcacgtaccgtcataaattcttctatgtcatcgagggaaaaagct
ttcaaagcagttgagctttgggggcttaaaacaaacgttattagttcattaatgtccatt
ttattttcttctaaactcgtgtcgaccgtgcaatttgcttcttttgttctcctttctagc
gcaccactctctagcagtgccatcatgaaggagaatgtattagactctcttcctggaact
agtactagtgtttcagtatctgataatctcgatttgcttgctgagagtaatctacttaga
gacgagatacatcggctattatgtacatcacccgctgagatacttgaccaggatttggaa
gctcaagaaagggtacaggttttccttgcttggtccctagttcttacatatcttgcatct
ttaccggcttcttcatccaagagggaaaagttggttcaagaaatacaagagtctgcatct
tcagctatattggactgtctttttcaacatattccctttgaattggctgtgacaaatggc
atgaaaaagaaagactcagatctcccagctgagttggaagacattgcaacagcggctaca
cgtgcgattagaacagggtctgtactattcgtcgtggaatgtctttggcctgtacgacca
caaagtttgtctttacttgcttctgcaatatttgggttaatgctccatgttctgccggcg
ttcgttcgagtttggtttactagtttacgtgttcgttctgcttcatctgctattgaatct
ttcactaaaacatggtgcagtccccatctggtgtcagatgaattatctcagataaagaag
tcagatttcgtagacgagtgtttttctgtcagtgtaagtaaatctgccaatgaagtcgtt
gctacttacaccaaggaggagacgggaatggatctggttattcgacttcctgtttcatac
ccgcttcggcctgttgatgtagagtgtacaaggagccttggaattagcgaagttaaacaa
agaaaatggttgttgtccttgatggcgttcgttcaaaataagaatggtgcattggcggag
gcaataagaatatggaagagcaatttcgacaaggaatttgaaggagtagaggagtgcccg
atatgttacagtgtaatccatacatctaaccatagtcttcctcgcctcgcttgcaagacg
tgcaaacacaagttccatgccgcctgcctctataaatggttttctacttctcacaagtct
aattgccctttgtgccagtctcctttttaa
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