Silene latifolia (white campion): 141592695
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Entry
141592695 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141592695 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141592695
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141592695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
New_glue
Motif
Other DBs
NCBI-GeneID:
141592695
NCBI-ProteinID:
XP_074269560
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All DBs
Position
7:117276589..117292576
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AA seq
1161 aa
AA seq
DB search
MDDEPKLPSTPAPPPSLFPISTAATATATTTTTNPPPLFPISATAISSTTPQWLHNTSFT
TDLSTISSAPSAVNNDTDSEPEPIPKPKQKPSYELLESSEEERNDKRRKRKMTKKKKRKR
DNEYDNDNDDVARFSYGSRKSGVRAWDDSQIKPSTKDYYFDSKGDPDNLAFGCLYRMDIV
QYKHDDAARLTNDLQVYSRLSHQSLLLRGELDVDRLDSQTKSGGRYWSAKYSALERDRNF
KHIRVVAPKKHVESMLDDFIPVFDEDENGVSISGPLVTEESWEDEVLRKTRNFNKMTREH
PHNVEVWLDFAEFQDKVASRQPQKGARLQTLEKKISILEKAVELNPEEEDLVICLLKAYG
TKDSADILIGKWEKVLMQHSGSHKLWREFLHVVQGDFSTFKVSELRKMFAHAIQALSAAS
SKKHRQGHPAEAMPCVDHVDIEIEHGIVDIFLSLCRFEWQAGYHELATALFQAEIEYCLF
CPPLHLTEQSKKRLFEHFWNGNGARVGEDGALGWSTWLEKEEETRQKLLQKTSLEEDEQG
GWTGWFAPSSNDKENSPHSKADGSDVAVEGMEEDKEDEDANLEEDDASLLRMLGIDAGAE
ANSEVHDSRTWVRWSEEESLKDRDQWMPVRGSSGVSPGDEEMVEADEQLSRVIFFEDVSD
YLFSLSSPEARLSLVVQFIDFFGVEVSQCSSTNASSWNEKILSLETLPDSISKYIRNLNG
AGKLESGSSTLSLESLLQSPDSSARREMMNFLRNSALLCLKVFPRNYKLEEAILCAEEKA
KVGFNTLQQTAMPSRALAKNLLKTDRQDVLLCGVYARREAAFGNIDLARKVFDMALSSIS
GLHLENQSAPMLYLWYSEMELAGSVSSNSESTSRAVHILSCLGSGTAYIPYKGRPPSTQL
LRAHQGFKERINSIRSSWVREVVSDSSVALVCSAALFEQLTVGWAAGVKMLSDALFMVLP
ERKRRSYQLEFLLNYQVRMLEKHHKEATMSKLLQSVLSGLQIYPFNPELFCSLVHLSHLH
TVPNKLRWIFDDLWHKKPSIILALFALSYELSRGGSQHRIHGLFERALTNDKLRFSVFLW
RLYIAFEIDMGNISAARRVFFRAIHACPWSKTLWLDGFQKLNNILSAKELSDLQEVMREK
ELNLRTDIYEILLQDELTAKL
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgaaccaaaactcccgtcaacaccagcaccaccaccgtcactcttccccatc
tccaccgccgccaccgccaccgccactacaaccaccacaaatccaccgcctctcttcccc
atctccgccaccgcaatctcatccaccacacctcaatggctccacaacaccagcttcacc
accgacctctccaccatctcctccgccccttccgccgtcaacaacgacaccgattccgaa
cccgaaccgataccgaaaccgaaacaaaagccgtcttacgagcttctcgaatcttccgaa
gaagagagaaatgataaacgaaggaagcgtaagatgacgaagaagaagaaaaggaagaga
gataatgagtatgataatgataatgatgatgttgcgcggttttcttacggttcgagaaag
tctggtgttcgtgcttgggatgattctcagattaaaccttctactaaggattattatttt
gattctaaaggggatcctgataatttagcttttggttgcttgtataggatggatattgtg
cagtataagcatgatgatgcggcaagattgacgaatgaccttcaagtatattctcgattg
agtcatcaaagtttgctgttgagaggggagcttgatgtagatagactggattcacaaaca
aaatccggtgggcgctattggtctgccaaatattcagcactagaacgggatagaaatttt
aagcacattcgggttgttgcaccaaagaagcatgtggaatctatgcttgatgatttcatt
ccagtatttgacgaagatgaaaatggtgtctccatatctggaccccttgtgactgaggag
tcgtgggaagatgaggtattgcgaaaaactaggaattttaacaaaatgactagggaacat
ccccataacgttgaagtatggctagatttcgcagagtttcaagacaaagtcgcaagtagg
caaccacaaaagggcgcacgcttgcaaacacttgagaaaaagattagcatattggagaag
gcggttgaactcaacccagaagaagaagatttggtaatctgccttctgaaagcttatggg
accaaggatagtgcagatattctaataggtaaatgggaaaaggttcttatgcaacactct
ggaagtcacaagttgtggagggagtttttacacgtggttcagggagacttctccaccttc
aaagtctctgagctccggaaaatgtttgctcatgcaatccaagccctctctgctgcatct
agcaagaagcataggcagggtcatccagctgaggcaatgccttgtgtagaccatgtggac
attgagattgaacatggtattgttgatatctttctcagtctctgcaggtttgagtggcaa
gctggctatcatgagttagcgactgccttgtttcaggctgaaatagaatattgtttattc
tgtcctcctttacatctaactgagcagagcaagaaacgtttgtttgagcatttttggaat
ggtaatggtgcaagagttggagaagatggtgcacttggctggtctacgtggttggagaaa
gaggaagaaacaagacaaaagctgcttcagaaaacgtctttagaggaggatgaacaaggg
ggctggaccgggtggtttgcgccttcatctaatgacaaggagaattcaccccattccaaa
gcagacggttctgatgtggctgtagaaggcatggaagaagataaagaggatgaggatgca
aatcttgaagaagatgatgcttctttgcttaggatgctaggtattgatgctggggctgag
gctaatagtgaagtccatgactcaagaacatgggttagatggtcagaggaggagtcattg
aaagatcgtgatcaatggatgcctgttcgtgggagctctggggtctcccctggtgacgag
gaaatggtagaagcagatgagcagctttctagagtcatattctttgaggatgttagtgac
tatcttttctcattgagctcccccgaggctcgtttatctcttgttgtgcagttcatcgat
ttctttggtgtggaggtatctcaatgcagttccacaaacgcttcaagctggaatgagaaa
attctgagtttggaaacacttcctgactctatttcaaagtatattcgaaatttgaatggt
gctggaaaactagaaagtggctcaagcactctcagcctggaatctctattgcaaagtcca
gatagctctgcaagaagagaaatgatgaattttctgcgtaattcagctctcctatgttta
aaagtcttcccacggaattacaagttagaagaggctattctctgtgccgaagaaaaggct
aaagtaggattcaatacattgcaacaaacagctatgccttctcgtgctttagccaagaac
cttttaaaaactgatcgtcaggatgtcttattgtgtggagtttatgcacggagggaggct
gcttttgggaatattgaccttgccagaaaagtgtttgacatggcgctgtcatcaataagt
ggactgcacttggaaaatcagtctgccccgatgctttatctctggtactcagaaatggaa
cttgctggtagtgttagtagtaactcagagtctacctcacgtgcagtgcacatattatct
tgcttaggaagtggcactgcgtacatcccatataaagggcgacctccaagcacacaactg
ctcagggcacaccaaggtttcaaagagcgcataaattccataagatcttcatgggtacgt
gaagttgtaagtgatagctctgttgctcttgtctgttcagctgctctgtttgaacagttg
acggttggatgggctgctggagttaaaatgctctctgatgctctttttatggtgcttcca
gagagaaagagaagaagctatcagcttgaatttctgctcaactaccaagtgaggatgctt
gaaaagcatcataaagaagcaacaatgtcaaaactcttacaatcagtattatcagggttg
caaatatatccctttaatccagaacttttttgttccctggtgcatcttagccatctgcat
actgtacccaacaaactccggtggatcttcgatgacctatggcacaagaaaccatcaatc
atacttgcattgttcgcgctgtcatatgagctgagtagaggtggctctcagcataggatc
catggattgtttgagagagcgttgacaaatgataagttgcgtttctctgtctttctttgg
cggctttatattgcatttgagattgatatggggaacatatctgctgcaagaagagtcttt
ttccgggctatccatgcatgtccatggtcaaaaacgctatggctagatggttttcagaag
ctgaacaacattctgagtgcgaaagagctgtcagatctccaggaagtgatgcgggagaag
gagcttaatctgagaacagacatttacgagattctcttacaggatgaattaacggctaag
ctgtga
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