Silene latifolia (white campion): 141593406
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Entry
141593406 CDS
T11116
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
KO
K07466
replication factor A1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03030
DNA replication
slaf03420
Nucleotide excision repair
slaf03430
Mismatch repair
slaf03440
Homologous recombination
slaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141593406
03420 Nucleotide excision repair
141593406
03430 Mismatch repair
141593406
03440 Homologous recombination
141593406
03460 Fanconi anemia pathway
141593406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slaf03000
]
141593406
03032 DNA replication proteins [BR:
slaf03032
]
141593406
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141593406
Transcription factors [BR:
slaf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
141593406
DNA replication proteins [BR:
slaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
141593406
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
141593406
MMR (mismatch excision repair)
141593406
DSBR (double strand breaks repair)
HR (homologous recombination)
141593406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
zf-CCHC
tRNA_anti-codon
RADX
DUF223
zf-CCHC_2
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
141593406
NCBI-ProteinID:
XP_074270250
LinkDB
All DBs
Position
1:3663330..3669245
Genome browser
AA seq
1030 aa
AA seq
DB search
METVGLTEGAIATICTAEGTATADLQPVVQVTDIRLVNTKNTMSNTERYRLLLSDGVHSQ
QGMLATQKNALVKNGELQKGSIVQLYEFICNNIQNRKIIIITQLEVLQQICPVIGDPKQY
PQPGASVSSSVGQAAMNHAHVQPGNSHAAVPGPTYLESESGRFPQPKLESGAQMQYPPRG
ASVSPSVGKAEVNHAHIQPGNSHAAVPGPTYLESESGRFPQPKLESGAQMQYPPRGASVS
PTVGKAEVNHAHVQPGNSHAAVPGPTYLESESGRLPQPKPESGAQMQSNGRPSTVKEERG
RYAVNNGPPVCHESQSSAGVSGNAVGSGTYGVLNDVKTNISGAPSSNYTRPQQPMYRQQP
SMYMNRGPVAKNEAPPRIVPIAALNPFQGRWTIKARVTAKGELRHYNNARGEGKVFSFDL
LDSDGGEIRVTCFNAVVDQFHDVIEVGKVYLISKGSLKPAQKTFNHLPNDHEILLDTTSM
VQPCHDDDNKIPRLQFHFHPISDIEGLENNSFLDVIGVVTSISPTATIMKKNGTETQKRS
LQLRDKSGRSVEFTMWGNFCNSEGQILQNLCDSGNFPVLALKAVRVSEFNGKALGSISSS
QIYIEPDNPEARELKLWFNREGRNMPYVSISRETTSFGKTDVRKTVSQIKDEKLGTSEKP
DWITVCATLSFMKMDNFCYPACPLQIGDRQCNKKVLNNGDGKWRCDRCDQSVDECDYRYI
LQFQIQDHTGLTWATAFQESGEELLGMSAKDLFDLKYDKGDDEAFQETVRAALFRKYIFK
LKVKEETYNDEPRVKSTVVKVEKVNFATESKFLSDMMQKLTNGDSGLHAKQESISPNIGT
DVGMTPSSSSGIEMGGFNSTTSQYGNQYNGGYGGASASGLSATCTSCGGTGHSSANCPSI
INGPGQPSGNMVNRAFSGGNTGSSTSQCFKCQQVGHFARDCPGVASGGNTGSSTLECFKC
QQVGHFARDCPGVASGGNTGSSTLNCFKCQQVGHFARDCPGLSSVPPAYGRNSVTPGRYG
GVQVQNVGGF
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggagacggtaggcttaacggaaggagcaatcgccaccatatgcaccgccgaaggcacc
gccaccgccgacttgcaaccggtggttcaggtgacggatattcgattggtgaacacaaaa
aatacgatgagtaacaccgaaagataccggcttttgttatcagatggggttcactcgcag
caaggtatgcttgcaacgcagaagaatgctttggtcaagaatggtgaattgcagaagggt
tcgattgtccagctttatgagttcatttgtaataatattcagaatcgcaagatcataatt
atcacccaattggaagtgcttcaacagatatgccccgtgataggagatccaaagcagtac
cctcaacccggtgcttcagtgtcatcatcagtaggccaagcagcaatgaatcatgcacac
gtacaacctgggaattctcatgcagctgttcctggccctacttatttggaaagtgaatca
ggtagattcccgcaacccaagctggaatctggtgctcaaatgcagtatcctccacgcggt
gcttccgtgtcaccatctgtaggcaaagcagaagtgaatcatgcacatattcaacctggg
aattctcatgcagctgttccgggccctacttacttggaaagtgaatcagggaggttcccg
caacccaagctggaatctggtgctcaaatgcagtatcctccacgcggtgcttccgtgtca
ccaactgtaggcaaagcagaagtgaatcatgcacatgttcaacctgggaattctcatgca
gctgttcctggccctacttacttggaaagtgaatcagggaggttaccacaacccaaaccg
gaatctggtgctcaaatgcaatctaatggtaggccttctacagttaaggaagaacgaggt
cgttatgctgtaaataacggtcctcccgtgtgccacgaatcacaatcttctgctggcgtt
tcaggaaatgctgtcggtagtggtacatatggcgtgctcaatgatgtcaaaacaaatatt
tcaggtgctccttcaagtaattatacacgtcctcagcaacccatgtatcggcaacaacca
tctatgtacatgaatagaggtcctgttgctaagaatgaagctccacccaggattgtccca
attgctgctttaaatcctttccaaggtcgatggactataaaagcaagagtgacagcaaag
ggtgagctccgacactacaacaatgcacgtggggaagggaaagtgttttcttttgatctt
ttggattctgatggaggtgaaatccgagttacttgcttcaacgctgtggttgatcagttt
catgatgtgattgaagtagggaaggtgtatctgatatctaaaggatcccttaaacctgct
cagaagaccttcaatcatcttcccaatgatcatgagatcctattagacaccacatctatg
gtgcagccttgtcatgatgatgacaataaaattccgagactgcaatttcatttccaccca
atcagtgatattgagggtttagaaaataatagttttcttgatgtgattggagtggtcact
tcaatcagtcccacggctacaattatgaaaaaaaatggaacagaaactcagaagagaagc
cttcagttgagggataagtccggcagaagtgttgagttcaccatgtggggaaatttctgc
aattctgaaggacaaatattgcaaaatttgtgtgattctggtaattttcctgttttggca
ctgaaagcagttagagtctcggaatttaacgggaaggcactgggaagtatttcatcaagt
caaatttatattgaaccagacaatccagaggctcgagagcttaaattatggtttaaccgg
gaaggcagaaacatgccttatgtctctatctctagagagacgacaagtttcggtaagacc
gatgttcgaaagactgtatcacagattaaggatgagaagctgggaacatctgaaaagcca
gattggattactgtatgtgccaccctatcattcatgaaaatggataacttctgttacccg
gcgtgcccattacaaattggcgatcgtcagtgcaataaaaaggtattgaacaacggagat
gggaagtggcgatgtgatagatgtgatcagtctgttgatgagtgtgactaccgttatatc
ctccaatttcaaatacaagatcatactggcctgacttgggcgacagccttccaggaatct
ggtgaagagcttttgggcatgtctgccaaagatctctttgatttgaaatacgacaaggga
gacgatgaggcatttcaagagactgttagggctgccctattccgtaaatatattttcaag
ttgaaagtcaaggaagagacatacaatgatgagccgcgagtaaagtcaacagtggtcaaa
gtagagaaagtcaattttgctaccgaatctaagtttctctcagatatgatgcagaagctt
acaaatggtgattcgggtctccatgccaaacaagagagtatatctcctaatatcggtacc
gacgttggaatgacccctagttcttccagcgggatagaaatgggtggattcaatagcact
acaagccaatacggaaatcagtacaatggtggatatggtggggccagtgcatcaggcttg
tcggcaacctgcacgagttgtggtggtactggccatagttcagcaaattgccctagtatc
atcaacggtccagggcaaccatcgggaaacatggtgaatcgagcattttcaggaggcaac
actgggagcagtacttcacagtgttttaagtgtcaacaagtcgggcattttgcaagggat
tgccccggagtggcgtctggaggtaacactgggagcagtaccttagagtgttttaagtgt
caacaagtcgggcattttgcaagggattgccccggagtggcatcaggaggtaacactggg
agcagtaccttaaattgttttaagtgtcaacaagtcgggcattttgcaagggattgcccc
ggattgtcatctgtccctcccgcttatggtcgcaatagtgttactccgggaagatatggc
ggtgttcaagtgcaaaatgttggaggcttttaa
DBGET
integrated database retrieval system
