Silene latifolia (white campion): 141595936
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Entry
141595936 CDS
T11116
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf04120
Ubiquitin mediated proteolysis
slaf04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
141595936
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
141595936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141595936
Enzymes [BR:
slaf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141595936
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141595936
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
141595936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
EIF3I
zf-C3HC4_2
Beta-prop_WDR19_1st
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_EML
zf-C3HC4_3
WD40_MABP1-WDR62_1st
zf-RING_2
Beta-prop_DCAF12
WD40_RFWD3
zf-RING_UBOX
zf-RING_5
zf-C3HC4_4
zf-Nse
WD40_like
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
U-box
DUF1664
DUF4175
RING_XB3-XBAT31
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
141595936
NCBI-ProteinID:
XP_074271999
LinkDB
All DBs
Position
8:complement(1148982..1155886)
Genome browser
AA seq
663 aa
AA seq
DB search
MAEPPIVPTIKSDSDTPPPPPTQEISPATNSAVCGGDDDGDVTCPICMQMIKDAFLTACG
HSYCYMCIVTHLRNNKSDCPCCGRFLTPNLIFPNFALDKLLKKMSDRQFIQSASSMDQLR
RALQKGCDISVKDLDSMLSLLAEKKRKMEQEEAETNLQILLEFLVYLRKRKLEELSEVQN
DLRYIKEDLQVIQKRSIDLSDIKGRCNVRVRVIDDDSNTMDICPPVPGSATDNCAIQDQI
AADSSHCKESFRLDAPLFSKMDAVACSKSQPFAPSERVIARKRQIKTQFTDLQEYYLRKR
RHWAKNSRIAEERVVNPSNSSGYYVGLENLQSVLTSCTRYSQLRVVSELRCSDFFHSANI
VSSSIEFDRDNELFATAGVSRRIKVFEYSSVVNEPTQVHCAVVDIATRSKLSCLSWNKYA
KQCIASTDYDGIVTVWDVNTNQSVGEYEEHEKRAWSVDFSWTEPSLLMSGGDDCKVKVWS
TKQEGSVLTINMNANICSVKCNPGSSVHVAVGSADHHVYYYDLRNISQPVCVFSGHRKAV
SYVKFLTSHELASASTDSTLRLWDVNEYKPLQIYRGHTNEKNFVGLTGNTEYLSCGSETN
ELFVYHKAISRPIARYRFSAADIGDTDDDRGQYFVSAVCWKSDSPIIMAANSRGNIKVLG
LTA
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacctccaatcgtacctacaatcaaatccgactccgacacgccaccaccacca
ccaacacaggaaatttctccggcgacgaattctgccgtgtgcggtggagatgacgacgga
gatgtgacgtgtccgatatgcatgcagatgattaaagacgcgtttttaactgcgtgtgga
catagttattgttacatgtgtatcgtcactcatttgcggaataataagagtgattgtcct
tgttgtggaaggtttcttactccgaatctcatttttccgaatttcgcgctcgataagtta
ttgaagaagatgtccgatcgtcagtttatacagagcgcctcttcaatggatcaacttcgt
cgagcactgcaaaagggttgtgacatttctgtaaaggatctggatagtatgttgtctcta
cttgccgaaaagaagagaaaaatggagcaggaagaggctgaaacaaatttgcagatcctt
cttgagtttttagtttatttgaggaaaaggaagctcgaagagctaagcgaggttcaaaat
gatctcaggtacataaaagaggatttacaagttattcagaaacgcagtatagacttgtcc
gatatcaagggcagatgtaatgtcagggtgcgagtaatagatgatgactcaaatacgatg
gatatatgtccaccagtacctgggtctgcgacagacaactgtgctatacaagaccaaata
gctgcagacagttcacattgtaaagagagttttcgcctagatgctcctttgttcagtaaa
atggatgctgttgcttgttcaaaatctcaacctttcgctccatcagaaagagttatagca
aggaaaaggcagataaaaacacagttcactgatcttcaagaatattacttaagaaaacgt
cgtcactgggccaaaaactcacgaatagcggaagaaagggttgtgaatccttcaaacagc
tcaggttactatgttggactggaaaatctccaatctgttctcacttcctgtactcgatat
agccaactgagagtggtttctgagctgaggtgtagcgatttctttcattcagcaaacata
gtctccagcagtatagagtttgacagagacaatgaattgtttgcaactgctggcgtttct
aggcggatcaaagtctttgagtactcctctgtagtgaatgaaccaacacaagttcactgt
gctgttgttgacattgcgacacgatccaaactaagctgcttgagttggaataagtacgct
aaacaatgtatagccagcactgactacgatgggattgtaactgtttgggatgttaatacc
aatcagagtgttggggaatatgaggagcatgaaaaacgcgcttggagtgtggacttctca
tggactgaaccctcactactaatgtctggtggtgatgactgtaaggttaaagtatggtcc
accaagcaagaagggagtgttcttaccatcaacatgaatgcaaatatttgttctgtgaaa
tgtaatcccggatctagcgtgcatgtggctgtgggctctgcagatcatcatgtttactat
tatgacttgaggaacattagtcagcctgtctgtgtcttctctggccatagaaaagctgtt
tcttatgtcaagttcctgactagccatgagcttgcttctgcatcaactgatagcacattg
cggttgtgggatgtaaacgagtataagccgctccagatatacagaggacacacgaatgag
aaaaactttgtaggtctcaccggtaacacggaatacctttcgtgtggtagtgaaacaaat
gagctttttgtctatcacaaggcaatttcccgacccattgctcgttatagattcagtgca
gcagatattggcgacactgacgatgacagaggtcagtactttgtcagtgcagtgtgctgg
aagagcgacagtccaatcatcatggctgccaatagtcgaggaaacatcaaagtacttggt
cttactgcctga
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