Silene latifolia (white campion): 141596143
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Entry
141596143 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141596143
KO
K18734
protein SMG8
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141596143
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
141596143
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
141596143
NCBI-ProteinID:
XP_074272326
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All DBs
Position
1:complement(8005782..8017940)
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AA seq
1234 aa
AA seq
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MDTHIKSKNPNPTTSMRVLTRPPPSPPPLPPPHSQPSPTPPPPTPPVSTGVAVVGFISRR
RTDVSDLINRIIDADIFGSSRRDTPLVIPFSDGDEDEANDYAKEWFDCRRISYYHDADTA
TVFLQLSSTNCPAMRKVSEFDSIVDDLEFGDLQAMLFMFTVCHVIIYIQEGASFDTQNLK
MLRVLQSAKHALVPFLRSHSILPSLGRPSSSSSRPTQATSSKSPSPRRGSNISSRNNSPI
SVMSGLGLYPALFPGQCTPVTLFAFVDDFSEMVNSSAASEESNDASSSSRSSTSSMVRSN
QSLKGSSSVVVLSRPANKSESSFCKKMLSSLETQIRFLIKKCRPLTVSENSSLTGSRSGS
ISSSAPLLTLDASRAVVLLDSSGIRRGSSLDYATSLVEDVVSGKMTSDSLLLEIHSQNGM
KEDILTLKEFINKQTDILRGKGGLVTNANSGSAAGVGMVAVAAAAAAAASAASGRLTTTP
ELPSLEMWISSSHLILKGILLGKSVSLDETYAIRRKFRQRSGAPPLVEGVAARPVDPPDI
AVSQLESGKGINRKFSYLWCLKALPAAKEVYLKDLPPCYPTSVHEAQLEKALHAFLSMVK
GSCVQEFVKKLQEECLSIWKSGRQLCDAISLTGKPCMHQKHDIENDNLSTEATGTEHKSG
YVFLHACACGRSRKLRDDPFDIETANVKFNIFPDCDNLLPMLQLPKLNESRLFQPFPWTL
VRLGGARYYEPSKGLLQAGFSPSEKFLLRWTIVLENDNPPSVSFANALRQGSASSKVDLK
IVSTEAEDAKKSNKAAVEPGELQTGGEGHGKAVNFSHSENKISFGKGLPNITMRKAFSEV
VAGSNSNSAFPPLQPKAQLISGPGKGGKRTAKVTSTVQTIISSGDFQISGKSKEITSAGS
ENSKTRRDNSHGDGNSMLDISKSVVPLDANNASNAFEVSVTDSGKTRFSPTCRHFVVYVG
FEHECPRGHRYILSPEILNQLGQLDSLPEESPRTRPVEHGNRKHRGPVKLGKNDGHNKIP
RLSNGNTINMEKVGNLERPTEARTGSDTAVNGLPHLFKPLDQATHDLSYSGADQQNPHYI
SLNDNGPAFSLLNRNIPIYLNCPHCSTSKNKDAQNLKFASSISQLQRIFVVTPPFPIVIA
ANPVVHFEASRQPTSVIDHDQPLQFSLGCQVILPPESSISIRLPFVYGIDVKDKGFNPLK
PFEPEPELTGWLMQGTALQVIAKGAAQTESFSNT
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggacacccacatcaagtccaagaacccaaaccccaccacttcaatgcgagtccttact
cgcccgcctccttcacctccgcctctaccgccgccgcactcccaaccatctcccactcca
ccaccgccaactccgccagtgtctaccggtgtcgccgtcgtcggattcatatcccggcgc
cgcaccgacgtctcagacctcattaatcgaataatcgacgccgatatcttcggttctagc
cgccgcgacacgccactcgttattcccttctccgacggcgacgaggatgaagctaatgat
tatgctaaggagtggtttgactgccgtagaattagctattatcatgatgcagatactgct
accgtctttcttcaactgtcttctactaattgccctgctatgcgcaaggtttccgagttc
gattccattgttgatgaccttgagtttggggatcttcaagccatgctcttcatgttcact
gtatgccatgtaattatttatatccaagagggcgcaagttttgatacccagaatttgaag
atgttgcgagttctgcagtctgcaaaacatgccttagtaccttttttaaggtcacatagt
atattgccatcacttggtaggccttcatcgtcgtcatcacgtcctactcaagcaacatca
tccaagagtccttccccacgaagaggcagcaacatctcaagtcgtaacaactctccaata
tctgtcatgtcaggcttaggtttgtatccagccttatttcctggacaatgtactcctgtt
actctctttgcttttgttgatgatttctcggaaatggtgaactctagtgctgcatccgag
gagtcaaatgatgcttcgtcatctagtcgatcgagcacgagtagcatggttaggtccaat
cagtccctgaagggttctagttctgtcgtagtgctatctcggccagcaaataaatctgaa
agcagtttttgtaagaaaatgctttcttctcttgaaacacaaatacgttttttgattaaa
aaatgccggccccttactgtctccgaaaacagtagccttacaggatcaagaagtgggtcc
atttctagttcagctccattgttgacactagacgcatctagagctgttgtgcttttagac
agctctggtatccgaaggggttcgtctctcgattatgcaacaagtctcgtggaggatgtt
gtgagtggaaagatgacttcagattctctgttacttgaaattcatagtcaaaacggcatg
aaggaggacattttgactctaaaggaattcatcaataagcagactgatatcctaagaggg
aaaggagggttggttacaaatgccaacagtggctcagctgcaggtgttggtatggttgct
gttgccgcagctgcagcagctgcggcatccgctgcttctggaaggctcaccaccactcct
gagcttcccagcttggagatgtggatatcttccagccatctcattttaaaaggaatttta
cttggaaaatccgtttctcttgatgagacttatgcaatcagaaggaaattccggcaaaga
agtggtgctccacctcttgttgaaggggttgctgcaagacctgtggatcctccggatatt
gcggtatctcaattagagagtgggaaggggattaacagaaaattttcatatttgtggtgc
ttgaaagctctaccagccgctaaagaagtttatctgaaagatttgcctccttgctaccct
acttcagtacacgaagctcaattggaaaaagctctgcatgccttcctgtcaatggtgaag
ggctcatgtgtacaagaatttgtgaaaaaactgcaagaggaatgcctttcaatatggaag
tctgggagacaattatgtgatgcaattagtttgaccggaaaaccatgcatgcaccaaaag
catgatattgaaaatgacaatctttccacggaggcgacgggcacggaacataaaagtgga
tatgttttccttcatgcttgtgcttgtggccgttctcgaaagttacgagatgaccctttt
gacattgaaactgctaacgtcaaatttaatatttttcccgactgtgataaccttctcccc
atgctccaactgccaaaactaaatgagagtcggctttttcaaccttttccgtggactctg
gttcgtcttggaggtgcaaggtactatgaaccttctaaaggattgctccaagctggattt
tctcccagtgagaagtttcttttaagatggactattgttctcgagaacgataatccccca
agtgtttcatttgctaatgctctcaggcaaggatctgcaagttccaaagtagacttaaag
atagtatcaactgaagctgaggatgccaagaaaagcaataaagcggcggtagaaccagga
gaattgcaaactggaggtgaaggccatgggaaggctgtgaatttttcacattctgaaaac
aagattagctttggtaaaggccttccaaatattacaatgagaaaggccttttctgaggtc
gttgcaggatcaaattctaattcagcatttcctcctttacagcccaaggcccaattaatt
tctggtcctggtaaaggtggtaagaggactgcaaaagttaccagcactgtgcaaactatt
atctccagtggtgattttcaaatatctggaaaatcgaaagaaatcacctcagcaggttca
gaaaattctaagacaagaagggacaatagccacggtgatggcaactctatgctagatatc
agtaagagtgtggtcccacttgatgcgaataatgctagtaatgcttttgaagtcagtgtt
actgatagtggaaaaactaggtttagtcctacttgcaggcactttgtagtttatgttggc
tttgagcatgaatgtcctcgtggccaccgctatattttatctcccgagattttgaaccag
cttgggcagctggattccttgcctgaagaatctcctcgtactcgccccgttgaacatggt
aaccgtaagcacagaggcccagtgaaattgggtaagaatgatggtcacaataaaattcct
cgattatctaatggtaacactattaacatggagaaggtaggcaatttggaacggcctact
gaagctaggactggcagtgacactgccgtaaacggattgccacacttgtttaaaccacta
gaccaggcaacacatgatttatcatactctggtgcagaccaacagaatccccattatata
agccttaatgataacgggcctgcattttcattgctaaacagaaatataccgatatacctg
aactgccctcattgtagcacttcaaaaaataaggatgcacaaaacttgaagtttgcgagt
tcaatatctcaactacagaggatctttgtggttacacctccttttccaattgtcattgca
gcgaaccctgtagtacattttgaggcttcccgtcaacctaccagtgttatagaccatgat
cagccacttcaattcagcttaggatgtcaagttattttgcctcctgagagttccatctcc
atcaggctgccctttgtgtatggcattgatgtcaaagataaggggttcaatcctcttaaa
ccctttgaacctgagcctgagttaactggctggctcatgcaaggcacggcattacaggtc
attgcaaagggagcagcacagactgagagcttcagtaatacataa
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