Silene latifolia (white campion): 141596278
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Entry
141596278 CDS
T11116
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141596278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slaf03021
]
141596278
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141596278
Transcription machinery [BR:
slaf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141596278
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141596278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
141596278
NCBI-ProteinID:
XP_074272482
LinkDB
All DBs
Position
8:8545265..8555191
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AA seq
679 aa
AA seq
DB search
MEDADGGLSFDFEGGLDIAPTIPTASNPVLQPEQHTSAAATTAANANNHAAAAPQYDAGN
RRSFRQTVCRHWLRSLCMKGDSCGFLHQYDKARMPICRFFRLYGECREQDCVYKHTNEDI
KECNMYKLGFCPNGPDCRYRHAKLPGPPPPVDEILQKIQQLTSYNYGGQNRFYQQRNTNY
SQQSERPQFQQGDNAANQAVVPKPSATDLSNMQQQSQDQKQVAGQAPAQNPAGDPSNPTS
RTATPLPQGITRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVEHVILIFSVN
RTRNFQGCAKMSSKIGESATGGNWKHAHGTAHYGRNFSVKWLKLCELSFNKTRHLRNPYN
ENLPVKISRDCQELEPSVGEQLASLLYTEPDNELMEILVAAEAKREEEKAKGVNMENGAE
NPDIVPFEDNEEEEEEEESDEEDESFGQAPGLAFQGRGRGRGMMWPPNFPMGRGMRPMPR
MGGFPAGMVGLDGFAYGPGPGPDAFPMPDPFGMAPRPFMPYGPRFPGDFAGPGPGMMFHG
RPQPGGVGPGGGFGMMGPGRAPFMQGMGGRGGRPMGMAPMFPPQPGPPQGGPNRPPKRDQ
RGPNNDWGEPYGTGPEPGKAQDDLQHQTIKSQTDDKYSSRKHPGNDDSESEDEAPRRSRH
GEGKKKRRDVEGDVNSSDQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgcagacggaggtctaagtttcgatttcgaaggcggtctcgacatcgctccc
accattcctacagcatctaaccccgtcctccaacccgaacaacacacctccgccgccgcc
accaccgctgccaacgccaataaccatgccgccgcagcgccgcagtatgacgccggaaac
cgccggagtttccgacaaacggtgtgccggcattggttacgaagtttgtgtatgaaaggc
gattcgtgcggctttcttcatcagtatgataaagctcgtatgcctatttgtcggtttttt
cgattgtatggcgaatgtcgggaacaggattgtgtttataagcatactaatgaagatatc
aaggagtgtaatatgtacaaattgggtttttgtccaaatgggccagactgccgttacaga
catgctaaactgcctggacctccaccgcctgtcgatgaaatccttcagaagattcagcag
ctcacttcttataactatggtggtcaaaatagattctaccaacagaggaatacaaattat
tctcaacagtcagaaagaccgcagttccaacaaggtgacaacgccgcaaaccaagctgta
gtccctaaaccatctgcaaccgacctctctaacatgcagcaacaatcacaagaccagaag
caggtagccggccaggctccagcacaaaatcctgctggtgatccgtcaaatccaactagc
aggacagctactccattgcctcaagggataactaggtattttattgtgaagagctgcaat
cgtgaaaatctggagttatctgttcaacaaggtgtatgggctactcaaaggagcaacgaa
gctaaacttaatgaagcatttgattctgttgagcatgtaattttgatattctcggtcaac
cgtactcgaaactttcagggctgtgcaaagatgtcctctaaaattggtgagagtgccact
ggtggtaactggaagcatgcacatgggactgctcattatggaaggaatttctccgttaaa
tggttgaagttatgcgagctgtcgttcaataaaactcggcatctgaggaatccgtacaat
gaaaacttgccagtaaagataagtagagattgccaggagcttgaaccttctgttggtgag
cagttggcgtccttgctttataccgaaccagacaacgaacttatggaaattctagttgct
gctgaagccaaacgtgaggaggaaaaggcgaaaggagtgaacatggaaaacggtgctgaa
aatccggacatagtgccatttgaagacaatgaagaagaggaagaggaggaagaaagtgac
gaggaagacgagagctttggtcaagcacctggacttgcatttcaaggcaggggaaggggt
aggggaatgatgtggcccccaaatttccctatgggtcgaggtatgaggcccatgcctagg
atgggcggctttcccgctggtatggtaggccttgatggctttgcatatgggcccgggcca
gggcctgatgccttccctatgcccgatccattcggtatggctcctcgccctttcatgcca
tacggtccacgattccctggcgacttcgcgggtcccggacccggtatgatgtttcatggg
cgacctcagccaggaggtgtcggccctgggggtgggtttgggatgatgggacccgggcgt
gctccttttatgcaaggaatgggtggtagaggcgggcgaccaatgggcatggctccgatg
tttcctccccagcctggcccaccacaaggtggtcccaatagacccccgaagagagatcaa
cgaggacctaataatgactggggtgagccatacggaacagggccagagccagggaaggcc
caagatgacctgcaacatcaaactatcaagagccaaaccgatgataaatatagttctaga
aagcatccaggaaacgatgacagtgaaagcgaggatgaggctccaaggaggtcaaggcat
ggcgagggaaagaagaaacgtcgagatgtggaaggagatgtcaatagctcagaccagtga
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