Silene latifolia (white campion): 141597027
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Entry
141597027 CDS
T11116
Name
(RefSeq) ATP-dependent RNA helicase HAS1-like isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141597027
03009 Ribosome biogenesis [BR:
slaf03009
]
141597027
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141597027
Spliceosome [BR:
slaf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
141597027
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
90S particles
Helicases
141597027
Pre-60S particles
141597027
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Cas3-like_C_2
Helicase_C_2
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
141597027
NCBI-ProteinID:
XP_074273437
LinkDB
All DBs
Position
1:9170831..9180587
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AA seq
564 aa
AA seq
DB search
MTNKKRGKKRQRDNQTHDHITNKLHQTETGKRVESYPLNTDSSSSKSDEEFNTKMELNEE
DDTNNINNGGSPSSSSSGIMSDVSFTSLTNLSGPTMNAISSMGFTTMTQIQARTMPPLFE
GKDVIGAARTGSGKTLAFLVPAVELLHNSRFTPQDGVGVIVICPTRELAVQTHEVAKALM
KDHSQNLALLTSSSGRSKEEENLRNGVNVIVATPGRLLDHLQHTKGFLFKNLKFLVLDEA
DRILESNFEEEMNKIMKILPKKRQTALFSATQTKKVEDLARVSFRSTPIYIDVDEGRTKA
TNEGLVQGYCVVPSSQRFVFLYAFLKKNSSKKIMVFFSSCNSVKFHSELLRFIKIDCFDI
YSKHKSSKRESTMSDFRKAEKGILLCTDVAERGLDIPDVDWVIQFDPPHDPEAYIHRVGR
TARGEGAKGNALLFLTPEELLFLCHLKKHKVPVKEHEFDQKKVPKVQSHLEKLVGSNYYL
NKSAKDAFRAYISAYKSHFMKDAFNIQTLDLQAVATSFCLTCAPHVNIDIQNGASYLKKR
PQQSGHVSRSATFAGPWRAPLPLL
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacaagaaaagggggaagaaacggcagcgagataatcaaactcacgatcatatt
accaacaaattacatcaaaccgaaacgggtaaacgggtcgaatcctacccgctcaatacg
gattctagctcatccaaatccgacgaagaattcaatactaagatggagcttaacgaagaa
gatgacacaaacaatatcaacaatggtgggtccccctcatcgtcgtcatcgggaattatg
agtgacgtgtccttcacgtcactgactaacttatcgggtcccaccatgaacgctatctcc
tccatgggtttcactacgatgacccagattcaagctagaactatgcctccactctttgag
ggcaaagatgtcattggtgctgcaaggacaggttctgggaagacccttgcttttcttgtt
ccagctgttgagttgttgcataattcccgcttcactccccaagatggagttggtgttatt
gtcatctgtccgacaagggagctagcagtacagacacatgaagttgctaaagcccttatg
aaggatcactctcaaaatcttgccttgttgactagtagctctggtagaagcaaagaagaa
gaaaaccttaggaatggagtgaatgtcattgtagcaactccaggacgacttcttgaccat
cttcaacatacaaagggatttttgttcaagaacttaaagtttttggtcttagatgaagct
gacaggattcttgagtcgaatttcgaagaagaaatgaataagataatgaagattcttcct
aagaagagacaaacagctttgttctcagctacccagaccaagaaggttgaagatctggct
cgtgtatctttccggtctacacccatctacattgatgttgatgaaggaaggacaaaggct
actaatgaaggattggtacaaggctattgtgttgttcctagttcgcaaagatttgtcttt
ctctatgctttcctcaaaaagaattcatcaaaaaagataatggtcttcttctcttcctgc
aactcagtaaaatttcattctgaactcctgagattcattaagatagattgcttcgatata
tatagcaagcacaagtctagcaaaagggaaagcacaatgtctgacttccgtaaagcggaa
aaaggcattcttttgtgtactgatgttgctgagcggggacttgatataccggacgtggat
tgggtgatacaatttgatcctccacatgacccagaggcatacatacatagggtcggacga
actgctcgtggagaaggtgccaaagggaatgctctactcttcttgacccctgaggagttg
ctgtttctttgtcacttaaagaaacacaaggtgcctgttaaagagcatgaatttgatcaa
aaaaaggttccaaaagtgcaatctcatctggagaaattggtggggagtaactattacttg
aacaagtcagctaaagatgcattccgggcctacatttcagcctataaatcacatttcatg
aaggatgcatttaacatacagacacttgatttgcaggctgtagccacgtcgttttgctta
acttgcgctccacatgtaaatatcgatatacaaaatggagcatcatatttgaagaagagg
ccacaacagagtggccatgtgtcacggtccgctacttttgccggaccgtggcgcgcacct
ttgccccttctctag
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