Silene latifolia (white campion): 141597159
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Entry
141597159 CDS
T11116
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03030
DNA replication
slaf03420
Nucleotide excision repair
slaf03430
Mismatch repair
slaf03440
Homologous recombination
slaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141597159
03420 Nucleotide excision repair
141597159
03430 Mismatch repair
141597159
03440 Homologous recombination
141597159
03460 Fanconi anemia pathway
141597159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slaf03000
]
141597159
03032 DNA replication proteins [BR:
slaf03032
]
141597159
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141597159
Transcription factors [BR:
slaf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
141597159
DNA replication proteins [BR:
slaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
141597159
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
141597159
MMR (mismatch excision repair)
141597159
DSBR (double strand breaks repair)
HR (homologous recombination)
141597159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF223
zf-like
TMEM219
Motif
Other DBs
NCBI-GeneID:
141597159
NCBI-ProteinID:
XP_074273618
LinkDB
All DBs
Position
8:103014023..103025976
Genome browser
AA seq
624 aa
AA seq
DB search
MAVNLTRNALAAILEGDVNSKPLLQVLDIKPVGSNLDRYRLLLWDAVATGQAMIATQLND
RVKSGHVRKGSVIQLIDYICSPIQNRKVIVILNFETIILECDIIGNPSLALPGANSSAGI
TLSSNVGVNPVSVGPNKFSAPSNSNNAQNYRPAVQPPYQPPPSYKNHGPIVKNEAPARIL
PIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDR
FYDVIEAGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSIVDLCLDEDVSIPKQQFNFR
PISEIETAENNSILDIIGIVISVNPSVPIMRKNGMETQRRIINLKDGSSRSVDLTLWGDF
CNREGQQLQELFESGKFPIVAVKAAKVNDFSGKSVGTISSTQLFIDPDIPESQSLYDWFC
GGGKDSTAQSISRDATPLGGKNEIRKTVSQIKDEGLGRSEKPDWVTIRATISFIKSDTFC
YTACPLMIGDRQCNKKVTKSGNSSWVCDRCNQEFEECDYRYLLQAQIQDHSGLTWVTAFQ
ETGEEIMGCSAKELYSLKYEEEDEERFASIIRGSLFMPFLFKLKVKEESYGEEQRVKATV
VKADKIDYVAESKYLVNAISNHRH
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaatctgactaggaacgcgttagcggcgatactagaaggcgacgtcaattcc
aaacctttgcttcaagtcttggatattaaaccagtcggatccaatttagaccgctaccgt
cttcttttatgggacgccgttgcgactggtcaagctatgattgctacgcaactcaatgat
cgcgttaaatccggtcatgttcgcaaaggttccgttattcaattaattgattatatttgt
agccccatccaaaatcgcaaggttattgttatcctcaactttgagactataattctagaa
tgtgacattatagggaacccatctcttgccttgcctggagccaattcttctgccggaata
acattgtcctctaacgtcggcgtcaatccagtcagtgtaggtcccaataagttcagtgca
ccaagtaatagtaataatgcacaaaattacagaccagctgttcaacctccatatcagcca
cctcctagttataaaaatcacggaccaattgtgaagaatgaggcaccggctcgcatactt
ccaattgctgcattgaacccttatcagggtcgttgggctattaaagcaagagttacagca
aaaggagaccttcgtcgttataacaatgccaaaggtgatgggaaggtgttctcctttgat
ctccttgattctgatggcggagagattcgtgttacctgctttaatgcggttgttgatcgc
ttttatgatgttattgaggctggaaaggtttatttgatctcaaagggtagcctaaaacca
gctcagaagaattttaatcatttgaaaaacgagtgggaaatatttttggagtccacttct
attgttgatctttgtctggatgaggatgtttcaattcctaaacagcaattcaacttcagg
cctatcagtgaaatcgagactgctgaaaacaactccatattggacattattggtattgta
atttcagttaatccttcggtccccataatgagaaagaatggtatggaaactcagagaaga
attataaatctgaaagatgggtcttctcggagtgttgacctaactctatggggagatttt
tgtaacagagaaggtcaacaactccaagaactgtttgaatctgggaagtttcccattgtt
gccgtcaaagctgcaaaagtcaatgatttcagtgggaaatctgttggtacaatttcttct
acccagctcttcattgaccctgatatccctgaatcacagagtttgtatgattggttctgt
ggaggtgggaaagatagtaccgcccaatctatctcaagagatgcaacacccctcggaggg
aagaatgagattaggaaaacagtctctcagattaaggacgagggtctagggagatcagag
aaaccagattgggtaactatcagggcaaccatatcttttataaaatccgacactttctgc
tatactgcttgccctttgatgattggagataggcaatgtaataagaaagttactaaatca
ggaaactcgagttgggtgtgtgaccgttgcaatcaagaatttgaggagtgtgattaccgg
tatcttcttcaagcacaaattcaagatcattcgggattgacgtgggtgacggcatttcag
gaaacaggtgaagagataatgggctgctctgcaaaagagttgtactctttgaagtatgag
gaggaagacgaggagaggtttgcatcaattattcgtggcagtctttttatgccatttctc
ttcaagcttaaggtaaaagaggagagctatggtgaagagcagagggtaaaggcaacagta
gtgaaagcggacaagattgactatgttgcagagagtaagtatttagtcaatgcgatctca
aatcatcgtcattga
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