KEGG   Silene latifolia (white campion): 141598473
Entry
141598473         CDS       T11116                                 
Name
(RefSeq) uncharacterized protein LOC141598473
  KO
K12828  splicing factor 3B subunit 1
Organism
slaf  Silene latifolia (white campion)
Pathway
slaf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:slaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    141598473
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:slaf03041]
    141598473
   03036 Chromosome and associated proteins [BR:slaf03036]
    141598473
Spliceosome [BR:slaf03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    141598473
 Complex B
    141598473
 Complex C
   U2 SnRNP specific factors
    141598473
Chromosome and associated proteins [BR:slaf03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    141598473
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_2 HEAT_ECM29 Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd ParcG Adaptin_N
Other DBs
NCBI-GeneID: 141598473
NCBI-ProteinID: XP_074274287
LinkDB
Position
1:11046831..11051338
AA seq 1276 aa
MSSIDAEIAKTQEERKKSEQELGSLSTVSYDVDLYGGNQRDGYLHSIPVDDDEEIVDAME
NKVASKLASYTAPKSLLKDMPGGVGGDVEDVFRKPQRITDRENEYQRRRLDQVISPDRND
AFAMGDKTPDVNVRTYAEIMREQALKRQKEETERAISKKMKEQEEQKKKTGEEKGSGAVP
AEVQSSQKRRNRWDQSQDKPADDGAVKKAKTSSDWDMPDSTPGIGRWDATPTPGRVGDAT
PSVRRNRWDETPTPGRVNDSDATPAGGGVTPGMTPSGMTWDSTPKIGGMATPTPKKQRSR
WDETPATMGSATPMAGATPAPMTPGVTPYGGMDLPTPTPGQLNLRGPLTPEQYNLMKWEK
DIEERNRPLSDEELDAMFPTEGYKILERPASYVPIRTPARKLLATPTPMGTPLYSIPVED
RGQQFDVGKEPTNGLPFMKPEDYQYFGVLLNEENEEELSPEEQKERKIMKLLLKVKNGTP
PQRKTALRQLTDKARELGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRP
YVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTA
RAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEI
IEHGLNDENQKVRTITALSLAALAEASAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKA
IGFIIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSD
ILPEFFKHFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRVVEDLKDESEPYRRMVM
ETIEKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPY
LPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPE
VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE
FVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQN
RVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA
VTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLMNYVWPNIFETSPHVIN
AVTEAIEGMRVALGAAAILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPILE
DEGENVYSRPELMMFV
NT seq 3831 nt   +upstreamnt  +downstreamnt
atgtcgtcgatagacgcggaaatagcgaagacgcaggaggagaggaagaaaagtgagcag
gagttaggatctctttcaactgttagttatgatgttgatctctatggtgggaatcagcga
gacggttatcttcattcgattcctgttgatgatgatgaggagattgttgatgctatggag
aataaggtggctagtaaattggcgtcgtacacggcgccaaagtctttgttaaaggatatg
ccgggtggtgttgggggtgatgttgaggatgtgtttaggaagcctcaaaggattactgac
cgtgagaatgagtatcagaggagacggttggatcaggtgatatctccagataggaatgat
gcttttgctatgggagataagactcctgatgttaatgttaggacgtatgccgagattatg
agggagcaggctttaaagagacagaaggaggagacggagagagcaatttcgaagaagatg
aaagagcaagaggagcagaagaagaaaacgggggaggagaaaggttctggtgcggtgcct
gctgaagttcagtcatcccagaagaggaggaataggtgggaccagtcacaggataagcca
gctgatgatggagctgttaagaaggctaaaacgtcgtctgattgggatatgccggattct
acccccgggattggcaggtgggatgccacacccacgccaggtagagttggagatgctaca
ccttctgttaggaggaataggtgggatgagactccaacacctggccgcgtaaatgattca
gatgctactccggctggtggtggtgtcactccgggcatgactccttcggggatgacatgg
gattctactccaaagataggcgggatggcaacacctacaccgaaaaagcagaggtcaagg
tgggatgagactcctgccaccatgggaagcgcaactccaatggcaggggccactccagca
cctatgactcctggagtgaccccttatggtggaatggatctccctacaccaactcccggt
cagcttaacttgcgtggtcctcttacacccgagcaatacaacttgatgaagtgggagaag
gatattgaggagaggaacaggccactgagtgatgaagaactggatgccatgttccctact
gaaggttataagatcttggagcgtccagcttcatatgttccaattaggacaccggctaga
aagctacttgcgacacccactcctatgggcaccccactgtattcaataccagtggaggat
aggggccagcagtttgatgtggggaaggagcctactaatgggctgcccttcatgaagcca
gaggattatcagtatttcggtgtactactgaatgaagaaaacgaggaagaactgtcacca
gaggagcagaaggagagaaagattatgaagttgctacttaaggtgaagaacggtacgcct
ccacagagaaaaactgcattgcgtcaactcactgataaggcccgagagcttggagcaggt
ccattgtttaaccgaatattgccgctgcttatgcagccgacattggaggaccaagagagg
catcttctggtgaaggttattgatagggtcttgtataagcttgatgagttggttcgacct
tatgtgcacaagattttggtggttatcgagccacttttgattgatgaagattattatgct
cgtgttgaagggagagagattatttcaaacttaagtaaggctgctggattggcaactatg
attgctgccatgagacccgatatcgacaatattgatgagtacgtgagaaatacaactgca
agggcttttagtgttgttgcttcagctctgggtattcctgctttgctacctttcttaaag
gccgtgtgtcaaagtaagaagtcctggcaagctaggcacactgggattaagattgttcag
cagatagccattttgattggttgtgcagtactacctcacttgaggtccttagttgagatc
attgaacatggtcttaatgatgagaatcaaaaggtcagaacaattaccgctctttctctg
gctgccttggcagaggcttcagctccatatggtattgaaagttttgattctgtgttaaag
cctttgtggaaaggtatccggtctcaccgtggtaaggttttggctgcatttcttaaggct
attggttttattattcctttgatggatgctctttatgctagctattatacaaaggaagtc
atgtttattttgattcgggagttccagtcacccgatgaagaaatgaaaaagattgtgctg
aaagttgtaaagcagtgtgtaagcacggaaggtgtggaagctgactacatcagaagtgac
atcctcccggaattctttaaacatttctgggtgcggagaatggcacttgaccgaagaaat
tacaagcagctggtggaaactactgtagagatagccaataaggttggtgtggctgatatt
gtaggtagggtagtggaggatcttaaagatgagagtgaaccgtataggcgtatggttatg
gagactatagagaaagtggtgactaacttgggagcatctgatattgatgctcgtttggag
gagcttcttattgatggcattctgtatgctttccaagagcaaacgagtgatgatgcaaat
gtaatgcttaacggatttggtgctgtggtcaatgcccttggccagagggtcaaaccatat
cttccccagatatgtggtacaatcaagtggcgtttgaacaacaagagtgccaaagtgaga
caacaagctgctgacctgatttcgagaattgccgtggtcatgaaacagtgtggagaagag
cagctcatgggtcatttgggtgtggtcctctatgagtatctcggagaagagtacccagaa
gtgttgggatcaatcctgggagccctcaaagccattgttaatgttattggtatgacaaag
atgaccccacctataaaagatttacttcccagattgactcctattttgaagaataggcac
gagaaagtgcaagagaattgtatcgatcttgtgggccgaattgctgatcgtggagcagaa
tttgttcctgcaagggaatggatgagaatatgctttgagcttcttgagatgctcaaggct
cacaagaaaggcatcagaagagccactgtcaacacctttggttacattgctaaagccatc
ggaccacaagatgtgttggccactcttctgaacaatctcaaggtccaagaacgtcagaac
cgtgtttgcacaactgtggctatcgccatcgttgctgagacttgctcgccattcactgtc
ttacctgcactcatgaacgagtaccgggtccctgagcttaatgttcaaaatggagtatta
aagtccctctctttccttttcgagtatattggtgaaatgggcaaggattacatctatgcc
gtgacccctcttctagaagatgctctcatggaccgagatttggtccacaggcagactgcg
gcttctgctgtgaaacacatggctcttggcgtggcaggcttgggttgtgaagatgcattg
gttcaccttatgaactatgtgtggcccaacatctttgagacttcaccccacgtcattaat
gcagttacggaagctattgaaggaatgagggttgcccttggtgctgctgccatactgaac
tattgcttgcagggactgttccacccagctcgaaaagtaagggaagtttactggaagata
tacaattctctgtatattggagcgcaggatgctcttgtggctgcttaccccattttggag
gatgaaggagaaaatgtctacagtagacctgaattgatgatgtttgtttga

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