Silene latifolia (white campion): 141598576
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Entry
141598576 CDS
T11116
Name
(RefSeq) putative pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf00040
Pentose and glucuronate interconversions
slaf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
141598576
Enzymes [BR:
slaf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
141598576
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
PATR
Motif
Other DBs
NCBI-GeneID:
141598576
NCBI-ProteinID:
XP_074274361
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Position
9:647106..649826
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AA seq
404 aa
AA seq
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MALHLSLLLLLLSLISPTIIHSSHVQDPELIVQEVQEKIYNATTRRNLGYLSCGTGNPID
DCWRCDSKWAKNRQRLADCAIGFGKGAIGGKNGKIYVVTNTKDDPVNPKPGSLRYGVIQD
EPLWIIFERDMVIKLKEELMLNSFKTIDGRGASVHIAGGPCITIQYVTNIIVHGINVHDC
KRGGNANVRDSPSHYGWRTISDGDGISIFGGSHIWVDHCSLSSCTDGLIDAIHGSTAITI
SNNYMTHHNKVMLLGHSDSETRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTH
WEMYAIGGSADPTINSQGNRFLAPNDPNNKEVTKREEWPQSAWKKWNWRSQGDLLLNGAF
FTTSGAAASSSYARASSLSARPSSYVGSITVNAGTLSCKQGSHC
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcattacatctctccttattacttcttcttttatccttaatttccccaactataatt
cattcctctcatgtccaagatcctgaactaattgtccaagaagtacaagagaaaatttac
aatgctaccactaggaggaacttagggtacctttcatgtgggacgggcaacccgatcgac
gattgttggcgttgcgactcaaaatgggccaagaaccggcaaaggctagccgattgtgca
atagggttcggaaaaggtgctataggaggtaaaaatggtaaaatttacgtggttacgaac
actaaagacgacccagtgaacccgaaaccagggagtttaagatatggggtgatccaggat
gagccattatggatcatattcgaacgtgacatggtaattaaactgaaggaagagttaatg
ttaaattctttcaagacaattgacggtcgcggggcgagtgtccatattgctggtgggccc
tgcataactatacaatatgtgacaaatattatagtccatggtattaatgtacatgattgt
aaacggggaggtaacgcaaatgtgcgtgactccccgtcacattatgggtggaggacaata
tcggatggtgatggtatttccatatttggtggtagtcatatttgggtcgatcattgttcg
ttgtctagttgtacggatggattaattgacgcgattcatggttcgactgctataacaatt
tctaataattatatgacccatcataataaggttatgcttttgggtcatagcgattccgaa
actcgagataagaatatgcaagttactattgctttcaaccattttggtgaagggttagtc
caaagaatgcctaggtgtagacatgggtattttcatgtggtgaacaatgactatacccat
tgggaaatgtatgctattggaggaagtgcagaccctaccattaacagccaaggcaataga
tttcttgctcctaatgatcccaataataaagaggtaacaaagagggaggagtggccacaa
agtgcatggaagaagtggaattggagatcacaaggagatttgctgttaaacggagcattc
ttcacaacatcaggggccgcagcatcgtcaagctacgcaagggcttcgagtttgagcgcg
cgaccatcatcttatgtcggttctatcaccgtcaatgccggtacacttagctgcaaacaa
gggtctcattgctga
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