Silene latifolia (white campion): 141598902
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Entry
141598902 CDS
T11116
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B-like isoform X1
KO
K03253
translation initiation factor 3 subunit B
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141598902
03012 Translation factors [BR:
slaf03012
]
141598902
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
141598902
Translation factors [BR:
slaf03012
]
Eukaryotic type
Initiation factors
eIF-3
141598902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF2A
WD40_WDHD1_1st
RRM_1
ANAPC4_WD40
Beta-prop_ELP1_1st
NST1
Motif
Other DBs
NCBI-GeneID:
141598902
NCBI-ProteinID:
XP_074274817
LinkDB
All DBs
Position
9:6586401..6592715
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AA seq
690 aa
AA seq
DB search
MAVDIIHQNHLNMFKYSDDEDFREEEIKIDHGFDNIIVVDNLPQVSLGGEKFDKLEKVIR
KIYSKIGGIKDNGFFMPVDEKTGESLGYCFIEFNTRQEAVLAKERTQGYKLDKAHTFSLN
LFEEIEMYTNVPEELALPQMQPFKQMENLQLWLTDAKARDQFVVRARQDTEVSWNDARLL
KPESVHKHPFWTESYVQWSPLGTYLGTIHPQGCAIWGGASSFERLRRFVHQQVQLIDFSP
GEKFIVTYSSHEPSNSLDTHTVVLNIFDTRTGKVKRCFQGSADEFAVGGAGDLTGISWPF
FKWAGGRDGKYFARIGKNGVSVYETETFTLIDKKSIKVENVMDFSWSPTDPVLALFVPEL
GNQPAKVSLYQIPSKVEIRQKNLFSVSNCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFEL
FRIKERDIPIEVLELENKSDKIIDFAWEPKGHRFAVIHGDNPRHDISFYSMKTTHHTSRV
SKLTTLKAKQANALYWSPCGRYIILAGLKGFNGQLEFFNVDELETMGMAEHFMCTDIEWD
PSGRYVATVVTAVHEMENGFNIWSFHGKLLYRIMKDNLSQFQWRPRPPSLLSSEKEEEIA
KNLKKYAKKYEVEDQDVSFWLSEQDSEKRRLLNKEWEALLKKWNSDHDNERLKREELTGC
EFSDDDEESEAEVVISEEVINVKEEIITHA
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgatattattcatcaaaatcatcttaacatgtttaaatacagtgatgatgaa
gattttcgggaagaagagattaaaattgatcacggttttgataatattattgttgttgat
aatttaccacaagtttcattaggcggtgaaaagtttgataagctcgagaaggtaattcgt
aaaatttacagtaaaattggcggtattaaagataatggattttttatgccggttgacgaa
aagacgggggaatcacttggttattgttttattgagtttaatactcgtcaggaagctgtc
cttgctaaagaaaggacacagggatataaactagacaaggcacatacattttctctgaat
ttgtttgaagagattgagatgtataccaacgttcctgaggagctggctctgccgcaaatg
caaccattcaaacaaatggaaaatcttcaactttggcttactgatgccaaagctcgggat
cagtttgttgttcgtgctaggcaagatacagaggtatcatggaacgacgccagactgttg
aaaccggaatctgttcacaaacatccgttttggaccgaaagctatgtgcagtggtcgccc
ttgggtacttatttggggacaatccatcctcaaggttgtgctatttggggcggggcctca
agttttgaacgtttaaggcgttttgttcatcagcaggttcagctaattgacttttctcct
ggagagaagtttattgttacttacagcagtcatgaaccaagcaattcccttgatactcat
acggtagtgctgaatatcttcgatacgaggacaggaaaggtgaagagatgtttccaaggg
agtgctgatgagttcgcagttggaggagcaggtgatttgactgggatcagttggccattt
ttcaaatgggctggtggaagggatggcaaatattttgccagaattgggaaaaatggagta
tctgtgtatgaaaccgaaaccttcactctcattgataagaagtccataaaggtggaaaat
gttatggacttcagttggtctcccaccgatccagtattggcactttttgttcctgagctt
ggtaaccaaccggcaaaggtcagtctttatcagatccctagcaaagtggagataaggcag
aaaaatcttttcagtgtcagcaattgcaaaatgtattggcaaagcaatggagattatctt
gctgttaaagttgatagatacaccaaaacgaagaaaagcacatacactggatttgagctt
ttccggatcaaagaacgtgacattcctattgaagttttggaacttgaaaataaaagtgac
aaaatcattgactttgcttgggagcccaagggccaccggtttgcagttatccatggtgat
aacccgaggcatgatataagtttctactcaatgaagacgactcaccacacaagcagagtc
tctaagctcacgactctcaaagccaagcaagcaaatgctctctattggtcaccctgtggt
cgttacataatattagctggattgaagggtttcaatgggcagttggaatttttcaatgtt
gatgagcttgaaactatgggtatggctgagcatttcatgtgtactgacattgaatgggat
ccaagtggaaggtatgttgccactgtcgtcactgcggttcatgagatggagaatggcttc
aatatttggtcctttcacgggaagcttctataccgtataatgaaggataatttatcccag
tttcaatggcgcccaaggccaccatccttgttaagttctgaaaaggaagaggaaatagca
aaaaacctaaagaagtatgctaagaagtacgaagttgaggaccaagatgtatcattctgg
ttgagcgaacaagactccgagaaaaggcgactattgaataaggaatgggaggcgttgctt
aaaaaatggaacagcgaccatgataatgagaggttaaaacgcgaggaattgacaggctgc
gagtttagcgatgatgatgaagaatccgaagctgaggtggtcatatccgaggaagttatt
aatgtcaaagaagaaatcattacccatgcttga
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