Silene latifolia (white campion): 141599229
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Entry
141599229 CDS
T11116
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE-like isoform X1
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141599229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slaf03009
]
141599229
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
141599229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_Nup120_160
Beta-prop_DCAF4
Beta-prop_DCAF12
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_RIG_1st
Cytochrom_D1
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_LRRK2
Beta-prop_pof12
Motif
Other DBs
NCBI-GeneID:
141599229
NCBI-ProteinID:
XP_074275285
LinkDB
All DBs
Position
9:16643469..16659441
Genome browser
AA seq
454 aa
AA seq
DB search
MFHPDPNNLIIFSGSADTTVRAWNLATKKCATMKNHFSDVVSLAISEDRRFLLSAGRDKV
VNVWDLLSYDCKMTIPTYEALFAVCVIRSGTPFYDGLSLNRFGKSKSMQEVYFLTAGERG
VVRIWEVCLLKLKASEVAFSSDKGDYKIGFTSAHLLPSDQGLMCITADQQFLFYSPLKRS
EEVPDLGLTKRLIGYNEEIIDMKFVGEDENFLAVATNIEQVHVYELPSMSCSYVLAGHSG
IILCLDTCIGSSGSVYVVTGSKDKSVKLWDTKTRKCVGDGIGHQKAVGAVAFSKKQRNFF
VSGSRDNTLKVWSFEGLVNDSDKPCRLKVKAVVAAHKKDINSVAVSPDDNFVCSGSQDRT
ACLFRLPELVQVASLVGHKQGIWLVAFSPVDPCVLTASADNTIKLWSVRDHSCLRTFEGH
GSSVHRASFITRGPWGSACINWCRWSTEAMEHKI
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgttccatcctgatcctaataacctcattattttttctggaagtgctgacacaactgtc
cgtgcttggaatcttgcaactaagaagtgtgctacaatgaagaaccacttttctgatgtg
gtgtcattagcaatttcagaggatagaaggttcctgctcagtgccggaagagataaggtg
gtcaatgtgtgggatcttctcagctatgattgcaagatgaccataccaacatacgaggct
ctttttgctgtttgtgttattcgttctggaactccattttatgatggtttatccttgaac
aggtttgggaagagtaaaagtatgcaggaggtgtatttcttaactgcgggtgaacgtggg
gtggttcgtatatgggaagtttgtttattaaagctgaaggcttctgaggtagcttttagc
tcggacaagggtgactataaaataggcttcacttcggcgcacctgctgccctctgatcag
ggattaatgtgcataactgctgaccagcagttccttttttactcacccttgaagcgttct
gaggaagttccagatttgggccttactaagcgactaattggatacaatgaagagataata
gatatgaaatttgtaggtgaagatgaaaatttccttgctgttgccaccaatatcgaacag
gtgcatgtttacgagctcccgtcaatgtcatgttcgtatgtacttgctggccattcgggt
ataattttgtgtcttgacacctgcattgggagttctggaagtgtatatgttgtgactgga
agcaaggacaaaagtgtcaagttatgggacacaaaaacccgaaagtgtgtaggggatggt
atcggtcaccagaaagctgttggagctgttgctttttcaaagaagcaacggaactttttt
gtcagtggtagtcgtgacaatacactcaaggtgtggagctttgaaggacttgtcaacgac
tctgacaagccttgccgtcttaaagtaaaagctgttgtggcggcccataaaaaggatatt
aactctgttgctgtttcaccagatgacaattttgtttgtagtggttcacaggatcgcact
gcctgtctgtttaggcttccagaactggtacaggtggcctcactggtgggtcacaaacag
ggaatttggttggtcgcgttttctcctgttgacccttgtgtcctgacggcatctgccgac
aataccataaaattatggtcagtgcgtgatcactcctgcttaagaacatttgagggccat
ggatctagtgtacatagagcatcctttatcacccgtgggccgtggggctcagcttgtatc
aattggtgccgatggtctactgaagctatggaacataagatctag
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