Silene latifolia (white campion): 141599243
Help
Entry
141599243 CDS
T11116
Name
(RefSeq) putative galacturan 1,4-alpha-galacturonidase SALK6
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf00040
Pentose and glucuronate interconversions
slaf01100
Metabolic pathways
Module
slaf_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
141599243
Enzymes [BR:
slaf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
141599243
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
141599243
NCBI-ProteinID:
XP_074275312
LinkDB
All DBs
Position
1:complement(13458317..13460292)
Genome browser
AA seq
400 aa
AA seq
DB search
MSRSILPIFLSVLYVSISVVRCQTVFDITKFGAKANADATEAMMKVWKEACASTTPSKIV
VPAGTYLMNSINLAGPCKGQITIELAGNFKAPADPSQMKDKSTWVKLEHVDGLTVNGLKG
GGSFDGQGQIAWKQNECAKTGTCDELPYNFRFNFLNNCKISGIKSINSKLYHMGVLGCKN
VTLYDTTIEAPANSLNTDGIHIGRSEGINVILAKIGTGDDCVSMGDGAKQIHVESVTCGP
GHGISIGSLGRYPNEAPVTGVTIKNCKISNTDNGVRIKSWLASYEAVASDLHFEDITVEN
VGNPILVDQEYCPYGHCKAKTPSKVKISNISFKNVRGTTSTKEAVKLLCSSGSPCDKVEL
ADIDLTFKGGAAVSMCKNVKPITSGKQNPVACSTPAPAGP
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggtctattctcccaatatttttatccgttttatacgtgtctatctcagttgtg
agatgtcagaccgtatttgacataacaaaattcggtgcaaaggctaatgcagatgcgaca
gaggcaatgatgaaagtatggaaggaagcatgtgcatcaacaacaccatcaaaaatagta
gtaccagcaggaacttacttgatgaactcaattaatcttgctggcccatgcaaaggccaa
attacaatcgagcttgcaggtaacttcaaggctcctgctgacccaagccagatgaaagac
aaatccacttgggttaaactcgagcatgtcgatgggctcaccgtgaatggccttaagggc
ggtggctctttcgatggtcaaggccaaatcgcttggaagcagaacgaatgtgctaaaact
ggcacttgtgatgaacttccttacaactttaggttcaacttcctaaacaactgtaagatt
agtggtatcaaatccatcaacagcaagttgtaccacatgggagttttggggtgcaagaat
gtgacactctatgacaccactatcgaagctccagctaacagccttaacacggacggtatc
cacattggacggtctgaaggtataaacgtgatccttgccaagatcgggacaggggatgac
tgtgtgtccatgggagatggtgcgaagcaaatccacgttgagtcggttacctgcggtcca
ggacacggtattagcattggaagccttggaaggtacccaaatgaggctcctgtcactggt
gtcactatcaagaactgcaaaatcagcaacactgataatggtgttagaatcaagtcttgg
cttgcttcttacgaagctgtcgcatcagacttacattttgaggatatcactgtcgaaaat
gttggaaaccctattcttgttgatcaagagtattgcccttacggccactgcaaagcaaag
acgccttcaaaggttaagatcagcaacattagtttcaagaatgtgagaggaacaacaagt
acaaaagaggcggtgaagctattgtgtagcagtggatcaccctgtgacaaggtagaactc
gcggatatcgacttgacatttaagggtggcgcggccgtctcaatgtgcaagaatgtgaag
ccaatcacaagtggcaagcaaaaccctgtggcttgtagtacacctgctcctgctggtcct
tag
DBGET
integrated database retrieval system
