Silene latifolia (white campion): 141599490
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Entry
141599490 CDS
T11116
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141599490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141599490
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141599490
mRNA degradation factors
5'-3' decay
Decapping complex
141599490
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
141599490
NCBI-ProteinID:
XP_074275617
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Position
1:complement(14276396..14285449)
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AA seq
808 aa
AA seq
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METARIRHHGRPPLSSGSSSSLLSAIDSPSFHPQHSIDNSFFDASQYAFFGKHVAEEVEL
GGLEDEEDNLSSAGLPSDEYHLFDKDGGQDVGVVSLSDMDDLETTFSKLNRVVTGPRNPG
VIGDRGSGSLSRESSSVAEWSRDGLLDHTISDVNSASESTVWSSHPHSSSLPGDYKPLPR
AVSYPDQQLQQQQYLQQHFPSETLSTPQLSSFTSFPLPGDGARQPLSHRHSLPLNIPSMN
VAADSCNYFPGISPAHGLRYSGSMPGVSPVHGLSNQPRNQWSNQAGLLHGDHSRMLDSVI
QQHLTQHLLQQAIRQPISPLDHFSFLQSQLIGSHASAPSHVLRKYDTMYGIAEMRDHQRP
KSMRGKHNRFSQQGSDSAQKSECIQFRSKYMTSEEIDSILKLQHTSHSNDPYIDDYYHQA
SAAKKSSGSRVKPHFAPMHLRDVPSRVRNSGSDQHGHQSVDTLRRLALSSIRRPRPLLEI
EPPSPGCNDSSNEHRSLEQEPMFSARIAVEDAFTLILDVDDIDRVLRHNPPQDGGSQLRR
KRQVLLEALAAALQLVDPLGTGGSTVDPGDDIVFMRLVSLPKGCKLLSKYLELVVVTPRA
ASELVRVACMAVFRHLRFLFGGPPTKPEATEATAKLAKVVLTCVNAMDLRGLSACLAAVV
CSTEQPPLRPLGSTAGDHASVILKSLLDRATELLYDSNPQASLSFWKASFTAFFTLLTKY
CVSKYDTIMQSVVNQAQTNSEITRSETARAIRGEMPVELLRASLPHTDEHQRRMLMEFAQ
YSIPFPATGLNHCDDDGDGLIASESVRS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggagactgctcggattcgtcaccatggccgacctccattatcctccggatcttcttct
tctctactttccgccattgattcaccttccttccaccctcaacactccatagataattca
ttttttgatgcatctcaatatgcgtttttcggtaaacatgtggctgaggaggtcgagtta
ggagggttagaagacgaagaagataacctttcttcagctggattgcctagtgatgaatat
catttgtttgacaaagatggggggcaggatgtaggtgtggtatctttgtctgatatggat
gatttggaaacaacattctcgaagttgaacagagttgtgacaggaccaaggaatccaggc
gtcattggtgatagagggtctggttcattgtcacgagaaagttcatctgttgcagaatgg
tcgcgggatggcttgttagaccacactatatcggatgtgaatagtgcatcagaatctact
gtgtggtcatctcatcctcattcgtccagtcttcctggggattataaacctttgcccaga
gcagtgtcctaccctgatcagcaactacaacagcagcagtatcttcagcaacacttccca
agtgagacattatcaactccacagttatcatctttcacctctttccctcttcccggtgat
ggagcccgacaacctttgtcacatcgccattcccttcctttgaatattccttccatgaat
gtcgccgcagattcctgtaattattttccaggaatttcccctgctcatggattacgttac
agtggaagtatgcccggtgtctcaccggtccacgggttgagtaaccaacctcgaaaccag
tggagcaaccaagcgggtttattgcatggtgatcattctaggatgctcgatagtgtaatt
caacaacatttaactcaacacctattgcaacaggcaatccgtcagccgatatcgccatta
gatcatttttcattcctgcagtcccagctcattggcagccacgcatcggcgccttcacat
gttttgagaaagtacgacacaatgtatggtatagctgagatgagggatcaccaaagacct
aagtcaatgcgcggtaaacataatcgtttcagtcaacaagggtctgactctgcccagaag
agtgaatgcattcagtttaggtccaagtatatgacttcagaggagatagatagtatattg
aagttgcaacatacttctcacagcaatgacccctacatagatgactactaccatcaagcc
tcagctgccaaaaaatcctcaggatcaagggttaagcctcactttgccccaatgcatttg
cgggacgtaccttctcgtgtacgtaatagtggttctgatcagcacggccaccagtcggtc
gatactctaagaaggcttgccttgtcttccattcgtaggcctcgcccacttcttgaaatc
gaacctccatccccaggatgcaatgacagtagcaatgaacacaggtctctggagcaagaa
ccaatgttttctgctagaattgctgttgaagacgcttttactcttattctggatgtagat
gacattgaccgtgttcttcgacataatccaccccaagatggtgggtcccagctacggcgc
aaaagacaggttttgcttgaagctttggctgcggcccttcagcttgttgatcctttaggc
actggcgggagtacagtggatccaggggacgatattgtattcatgcgcctcgtttctctt
cccaagggatgcaaacttctctcaaagtatcttgagctggtggtggttacccccagagct
gcaagtgagttagttcgagtagcttgcatggctgttttccgccatcttaggtttctgttt
ggtggtcctccaacaaagcctgaagctactgaggccacagcaaagcttgctaaggtagtt
ttaacttgtgtcaatgccatggatcttcgtggtctaagtgcttgtctcgctgctgttgtc
tgttctacagaacagccaccactacgcccacttggaagcactgctggggatcacgcttct
gtcatcttgaagtctttgctagatagagcaaccgaactactatacgactctaatcctcag
gcctctcttagcttctggaaggcgtcattcactgctttctttactctacttacgaagtac
tgtgtgagtaaatatgacacaatcatgcagtctgtagtaaaccaggcacagactaattca
gaaataacgagatcagaaacggcaagggctatacgtggggaaatgccagttgagctattg
cgtgccagtcttcctcacacagatgagcaccaacggagaatgttgatggaatttgctcaa
tactctattccttttcccgccactggtttaaatcattgtgatgatgatggcgatggccta
attgcctcagaatcagtcagaagttaa
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