Silene latifolia (white campion): 141599530
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Entry
141599530 CDS
T11116
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
141599530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141599530
Enzymes [BR:
slaf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
141599530
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
HECT type E3
141599530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
ARM_ARMC5
Arm
HEAT_EZ
PSP
Motif
Other DBs
NCBI-GeneID:
141599530
NCBI-ProteinID:
XP_074275667
LinkDB
All DBs
Position
9:33510500..33520312
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AA seq
1877 aa
AA seq
DB search
METRSRKRAEASSSSSPSSSSGTATATATRVSKRSRISSPAAETSTEAPPRSTRYRARTR
LSTPKSTGKTAMDESTSSRGGGRRARNKDNADKGKEKEHEVRASMEKEAMDDDEDGNEEN
DEGSDGGGVGLLHHNLTSASSALQGLLRKLGAGLDDLLPSSAIGATGSSSSHQSGRLKKI
LAGLRADGEDGKQVEALTQLCELLSIGTEDSLSTFAVESFVPVLVGLLNHETNPDIMLLA
ARAITHLVDVLPSSTAAVVHYGAVNCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLR
AGALMAVLSYLDFFSTGVQRVALATAANMCKKLPSDAADFVMEAVPHLTNLLQYHDAKVL
EHASVCLTRIVEAFAASSDKLDDLCNHGLVTQAVSLISTSNSGGGQASLSTSTYTGLVRL
LSTCASGSTVGAKTLMLLGVSGILKDILAGSGLVSNMSVSPALSRPPEQIFEIVNLANEL
LPPLPQGTISLPASSNLFVRGPLLKKSPASSSSNQDESNGNPPDAAAREKLLNDQPEFLL
QFGMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSNTDMISSLNNTTNISSFLAGVLA
WKDPQVLVPALQIAEILMEKLPETFSKMFVREGVVHALDSLILAAPSSSVSPQAATVEKD
SDSTAGASARMRRLRRRSGGLQQDANSAEESKYTVSASVGSPPGSVELPSVSSKLRSTVS
ASAKSLKNKYFPSDGGAVDVGISDDLLLLKKLCARLNSGVDEQKSKSKGNFKTSGTYAAN
FSVGKEESLVSIVSEMLAELSKGDGVSTFEFIGSGVVGALLTYFSCGYFSKEKISDANLP
KLRQQALQRYKSFISVALPTDITESSEAPMAVLVQKLQNSLSSLERFPVVLSQPARSSGG
SGRLSSGLSALSQPFKLRLCRAQGEKSLRDYSNTVVLIDPLASLAAVEDFLWPRVQRGDS
SQKQSSVGNSDSGATAASAGSPSASTPVPSTRRQSTRSRSGVNIGDTPRKDLSQEKNSSS
SKGKGKAILKPAHEETKGPQTRNAVRRKAASEKDAQLKSTNEESCSDEDMDMSPVDMDDS
LVIEDDDISDDEDDDHEDVLRDDTLPSCMADKVHDVKLSDSALDSASVPATSDGQANPTF
GSSSRAATVRASDSTDFRSGSSFGSRGAMSFAAAAMAGLASNGRGFRGGRDRHGRPLGGS
TDPPKLVFSAGGKQLNPNLTIYQAMQRQLVNDEEDDERLTGSDFVTSDGSRLWGDIYTIT
YQRADSQADKSSPSKSKESGSTSGSNCADVSRRSLLDSILQAELPCDMEKNNPTYDILSL
LRVLEGLNQLAPRLRVQLASDKFSEGVITSLDELSVTGTRVPTPEFINSKLTPKLSRQIQ
DALALCSGSLPSWCYQLTKACPFLFPFETRRQFFYSTAFGLSRALHRLQQQQGADGQGMN
EREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTL
LSHDLQKVDLGMWRANYSFDKTSLEIGDDQSKDWKSKDALRLSSSGDANIVQTPLGLFPR
PWPPSTGTSDGSQLCKVLEYFRLLGRVMAKALQDGRLLDLPLSMAFYKLVRGEELDLHDI
LSFDPEIGRTLQELQALVCRKQYLESIGGDHPDAIGELCFRGTPIGDLCLDFTLPGYPDY
VLKPGDETVDINNLEEYISLVVDATVETGISRQLEAFRAGFNQVFEVTSLQIFSPNELDY
LLCGRRELWKPDTLVDHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPMLP
PGGLAVLNPKLTIVRKLSSSGTTAANGTGASETADDDLPSVMTCANYLKLPPYSTKEVML
KKLLYAINEGQGSFDLS
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgtagccgaaagcgggcggaggcgtcctcttcttcttctccttcttcttca
tccggaacagcaaccgctaccgctactcgagtttcgaaacgctctcgaatttcatctccc
gccgccgaaacctctaccgaagcgccgccccgctccactaggtatagagctcgaacacgg
ttatcgactccgaaatcgacaggaaaaactgcaatggacgagtccacgtcatcacgcggc
ggtggtcgtcgagcgcgcaacaaggataacgccgacaaaggcaaggagaaggagcacgag
gttagggcttctatggagaaggaagccatggacgatgatgaagacggtaatgaggaaaat
gatgaaggaagcgatggcggcggtgtagggttgttacatcataatctgacgtcggcaagt
agtgcgcttcaaggtttgcttaggaagcttggggcaggtttggatgatttacttccgtcg
tccgctattggtgccacggggtcatcctcgtcgcaccaaagcggccgactgaagaagata
ttggcaggattgagggcggatggggaggatggaaaacaggttgaggctttgacgcagttg
tgtgagttgctttcgattgggactgaggattcacttagtactttcgctgttgagtctttt
gtgccggtgttggttggtttgcttaaccatgagacgaatcctgatatcatgttgttggct
gctagggccattacgcatttagttgatgtgttgccttcttctactgctgctgttgtgcat
tatggtgctgttaattgcttttgtgccaggttgttgactattgagtacatggacttagcc
gagcagtctctgcaagcacttaagaaaatatcacaagaacaccctaccgcgtgtttgaga
gctggtgcgcttatggccgtgctatcatatcttgatttcttttctacaggggttcagcga
gtggctttagctactgctgcaaatatgtgcaagaagctcccttcagatgctgctgatttt
gtaatggaagctgtccctcacttgactaacctcttgcaataccatgacgcaaaggttctg
gagcatgcttctgtttgtcttactcgaattgttgaggcctttgctgcatcatctgacaag
ttagatgacctttgtaatcatggtctggtcacccaggctgtttcacttatctctaccagt
aattctggtgggggtcaggcctccttgagcacttctacgtacactggcttggttcgactg
ctctccacatgtgcaagtgggtccactgtgggtgctaagactttaatgcttctgggagtg
agtggcattcttaaagacattttagcaggatctggactcgtgagcaatatgtccgtttct
cctgctctaagcaggccacctgagcagatatttgagattgtgaaccttgcaaatgaactg
cttcctccacttcctcaaggaaccatttcccttccagcaagctctaacttattcgtaaga
gggcctcttttgaaaaagtcgcccgccagcagttctagcaaccaagatgagtcaaatggg
aaccctccagatgcggctgcaagagagaaacttctcaatgatcagcctgagtttttgctc
cagtttggaatggatcttcttcctgtgctgatccagatttatggttcaagtgtaaatggt
cctgtccgtcacaagtgtctctcagtaattggtaaacttatgtacttcagcaacacagat
atgatatcatctttgaataatacgacaaacatctctagtttccttgctggtgtcttagcg
tggaaagatccacaggttttggttcctgcactccaaattgctgagatactaatggaaaaa
cttcctgaaacattctctaagatgtttgtgagagaaggtgtagtgcatgcgttggactcg
cttatattagctgctccctcaagttcagtttcaccccaggctgccactgttgaaaaggat
agtgactcaacagctggagcgtctgcacgtatgagacgtttgaggcgacgaagtggtggc
cttcagcaagatgcaaactctgctgaagaatccaaatatactgtttctgctagtgttggt
tcacctcctggttctgttgaacttccttctgttagttccaaactacgctctactgtcagt
gcttctgccaaatctttgaagaataagtacttcccttctgacggtggggcggttgatgtg
ggcatttccgatgatctcttactcttaaagaaactatgtgcaaggttgaattcaggtgta
gatgaacaaaagtctaaatcaaaaggaaatttcaaaacttccggtacttatgctgcaaat
ttctcagttggaaaggaagagagcctggtaagcatagtatctgagatgttggctgaacta
agcaaaggtgatggcgtttctacatttgaatttattggcagtggtgttgttggtgcgttg
ttgacctatttttcatgtggatacttctcaaaagagaaaatatccgatgcaaatcttccc
aagcttagacaacaagcactccaaagatataaatcatttatttcagttgctcttcctact
gatattactgaaagcagtgaagctccgatggctgttttagtacaaaaacttcaaaattct
ttatcttcattggagcgctttccagttgttttaagtcaaccggctaggtcatcaggtggg
agtggacgattgtcgtcaggtttaagtgcattatctcaaccatttaagctgcgtctatgt
agagcgcagggcgaaaaatctcttcgcgactattcaaatactgttgtactgattgatccg
ttagctagcttagcggctgttgaggactttctttggccacgagttcaaagaggtgattct
agccaaaagcaatcatctgtgggaaattctgattctggggctacagctgcctctgctgga
tcaccatctgcttccactcctgttcctagtactcgccgtcagtccactagatctagatca
ggtgttaatattggagacactcctagaaaagatctatctcaggagaaaaacagcagctct
tcaaaagggaagggaaaagctatactaaaacctgcacatgaggaaacaaaaggcccccaa
acaagaaatgctgtgcgcaggaaagctgcttcagagaaggatgctcaattgaaatcaaca
aatgaagaatcttgttcggatgaagatatggacatgtctcctgttgacatggatgactca
ctggtgattgaagatgatgacatttcggatgatgaagatgatgaccatgaggatgtactg
agggacgatacacttccttcatgcatggctgacaaggtgcatgatgttaaattaagtgat
tctgctctggactctgcatctgtacctgctacgagtgatggccaggccaaccctactttt
ggctccagtagtcgagctgcaactgtcagagcctcagactccactgattttcggagtggg
agttcttttggctcaaggggtgcaatgtcatttgccgcggctgccatggcgggactagca
tctaacggtagaggtttcagaggaggcagggatcgtcatggacgccctcttggtggttcc
actgatccccctaagttagttttctctgctggtggaaagcaacttaaccctaatttgacc
atataccaagccatgcaacgccagctggttaatgacgaagaagatgatgagaggcttact
ggaagtgattttgttaccagtgatgggagcaggctgtggggtgatatttatacgataact
taccagagggcagatagccaagctgacaagtcatctccgtcaaaatctaaagaatcggga
tctacttctggttcaaactgtgctgatgtgtcacgccgatctcttctggatagcatcctg
caagcagaacttccatgtgatatggagaaaaacaatcctacatatgatattttgtcactt
ttgcgtgtgctggaagggttgaatcagcttgcaccacggttgagagttcagttagcttct
gacaagttttctgaaggggttattacaagtcttgatgagttgagtgttaccggaactagg
gttcctactccagaatttattaacagtaaactcacccctaagttatctcggcagatacag
gatgcacttgccctctgcagcggtagtcttccttcctggtgctaccagttgacaaaagca
tgtccgtttttgtttccttttgaaacaaggcggcagtttttctattccactgcctttgga
ttatccagagccttgcatcgcttgcagcaacagcagggtgctgatggtcaagggatgaat
gaaagagaggtcagagtggggaggttacagcgtcagaaagtacgtgtatcaaggaaccgg
atcttggattctgctgcaaaagttatggaaatgtattctagtcagaaggctgtacttgaa
gtagagtattttggtgaggttggaacaggattgggtccaacattagaattctataccctc
ttgagtcacgaccttcaaaaagttgatctgggtatgtggagagcaaattattcttttgat
aagacttccttggaaattggtgatgatcaaagcaaagattggaagtccaaagatgccttg
agattgagttctagtggtgatgcgaatattgttcagactcctcttggtttgtttcctcga
ccttggcccccaagtactggcacttctgatggtagtcagctttgtaaagtccttgaatat
ttccggttgcttggacgagtgatggctaaagctcttcaagatggaaggcttttggatcta
ccattatcgatggctttctacaaacttgtgcggggggaggaacttgatttgcatgatatt
ctttcattcgaccccgagatagggagaacgttgcaagaattacaagctttagtttgcaga
aagcagtatctagagtcaatcggtggtgatcatccagatgcgataggggagttgtgcttt
cgtgggactccaattggagatctgtgtctggacttcacacttcctggttatccagattat
gtcttgaaacctggagatgaaactgttgatatcaataatctggaggagtatatttcgttg
gtagtcgatgctacagtagagactggaatttcgcgacaattggaagcttttagggctgga
ttcaaccaggtgtttgaggtcacatctttgcaaatattttctccgaatgagctagactac
ttactctgtggacgtagggaattgtggaagcctgatacgcttgtggatcacatcaaattt
gatcatggttacacagccaagagtccagcaattgtcaaccttcttgagatcatgggagag
ttcacgccggaacaacaacgtgccttttgtcaatttgttacaggtgcacctatgcttcca
ccaggaggtctagcggtgctaaatcccaagttgactatcgtgaggaagctttcttcttct
gggacgacagctgctaatggaacaggtgcttcagaaactgcagatgatgacttgcccagt
gttatgacatgtgctaattatctcaaacttcctccttactcaaccaaagaggttatgctc
aagaagttgctctacgctatcaatgaaggacaaggatcgtttgatttgtcatga
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