Silene latifolia (white campion): 141599708
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Entry
141599708 CDS
T11116
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141599708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141599708
Spliceosome [BR:
slaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
141599708
Complex C
U5 SnRNP specific factors
141599708
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
RRM_4
PROCT
JAB
Motif
Other DBs
NCBI-GeneID:
141599708
NCBI-ProteinID:
XP_074275911
LinkDB
All DBs
Position
9:complement(47450655..47461538)
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AA seq
2362 aa
AA seq
DB search
MWNGANPNPIPMAAQPLAPPGTSIPPPPAVQPSYTVLQPPPLPQQPESPADAEARLEEKA
RKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKF
VPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRRE
KRDRRHFKRMRFPPFDDEEPPLDYADNVLDVDPLEPIQLELDEEEDSAVHAWFYDHKPLV
KTKLINGPSYRKWHLSLPIMATLYRFAGQLLSDLVDRNYFYLFDMESFFTAKALNMCIPG
GPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRLGPYHTP
MIMYIKTEDPDLPAFYYDPLIHPITAAHKDRREKKVYEDDEDDFELPEGVEPLLTDTQLY
TDTTAAGISLLYAPRPFNMRSGRTRRAEDIPLVSEWFKEHCPPSYPVKVRVSYQKLLKCF
VLNELHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEAGLQVCRQGYNMLNLLIHRKNLN
YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQL
ADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMW
RVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVL
DAMPEGIKQNKARVILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVA
HYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTV
HWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNP
HEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRH
LFPNWVKPADTEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLN
RLLRLILDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLG
LTRASEIAGPPQMPNEFMTYWDTKVETRHPIRLYSRYIDKVHIMFRFTHEEARDLIQRYL
TEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGF
VSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAVAFLRVD
DEHLKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCEN
KIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHF
RSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWD
RGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTD
VIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRR
FTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDL
CQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAETKDVFD
QKASNKYWVDVQLRWGDYDSHDIERYTRAKFLDYTTDNMSIYPSPTGVMIGLDLAYNLHS
AFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFS
NQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRL
GQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPF
QACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRSLHVNNEKAKML
LKPDRTVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILG
AEITPPSQQRQQIAEIEKQAKATSQLTAVTTKTTNVHGEELIVSTTSPYEQEKFSSKTDW
RVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGVSP
PDNPQVKEIRCIAMPPQLGTHQQVNLPLQLPEHDFLNDLEPLGWMHTQPNELPQLSPQDV
TSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPAGYEWARAQKDTGTSLHGYLP
THSEKVQMLLSDRFLGFYMVPDSSPWNYNFMGAKHAPNLKYGVKLGTPKEYYHEEHRPTH
YLEFIKMEEGDSVEVEREDKFS
NT seq
7089 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacggggctaaccctaaccccatccccatggcggcgcaacctttagcgccgcca
ggtacttccattcctccaccgccggcggttcaaccgtcgtacaccgttttacagccaccg
cctttgccgcaacaaccggaatcccctgccgatgcggaggccaggctcgaggagaaggcg
cgtaagtggatgcagctcaattccaagcgatacggcgataagcgcaaattcggtttcgtt
gagacgcagaaagaggatatgcctcctgagcacgtccgcaaaattattcgagaccatgga
gacatgtcatccaagaaataccgccacgataaacgtgtgtatttgggggctcttaaattt
gtaccccatgcggtttacaagctccttgagaatatgcctatgccttgggaacaggttcgt
gatgtcaaggtgttgtatcacattactggagcgatcacattcgtaaatgagataccatgg
gttgtagaacccatatatctggcccagtggggtacgatgtggataatgatgaggagggag
aagagagaccgtcgccacttcaaaagaatgaggttccctcccttcgatgacgaggagcct
ccattggattatgctgataatgttcttgatgtggaccccttggagccaattcaactggaa
ttggacgaagaagaagactctgctgtgcatgcatggttttacgatcataagcctctcgtt
aagacaaaacttatcaatgggccaagttatcggaagtggcatctttctctaccaatcatg
gcaacactatatcggtttgctggccagttgctctctgatctggtggataggaattacttc
tatttattcgacatggaatcgtttttcactgcaaaagccttgaatatgtgcatacctgga
ggtccgaagtttgagcctctttatcgtgatatggagaagggagatgaggactggaatgag
ttcaacgatatcaataaactcatcatcagatcaccacttcggacagagtacagaattgct
tttcctcatctttacaacaatagaccaaggaaagtaaggcttggcccttaccacacacca
atgattatgtatataaaaacagaggatcctgatcttccggcattttattatgacccctta
attcatccaataactgctgctcataaggatcgtcgtgaaaagaaagtttatgaggatgat
gaggatgattttgagcttccagaaggtgtagaaccactgctcacagacactcagttatac
actgacactactgctgctggtatttcacttttgtatgcgccaaggccgtttaatatgaga
tctggtcgtacaaggcgtgctgaagatataccacttgtgtcagagtggttcaaggagcac
tgccctccatcatatcctgttaaagtgcgagtcagttatcaaaaattactcaagtgtttt
gttctgaatgagttgcatcaccgacctcctaaagctcagaagaaaaaacatcttttcaga
tctcttgcagctaccaagttttttcagagtactgaacttgattgggttgaagctggtctt
caggtgtgcaggcaagggtacaacatgctgaacctgttgattcatagaaaaaatttgaac
tatctgcatcttgattacaattttaatttgaaacctgtcaagacactgactaccaaggag
cgtaagaagtctcgttttggaaatgcatttcatctttgccgtgagattctgcgtttgaca
aagcttgtagtggatgccaatgtccagtttcgtttgggcaatgttgatgcctttcaattg
gctgatggcttgcagtatatattctcgcacgtaggtcagctaactggaatgtatcgttac
aagtataggctcatgcgacagatccggatgtgtaaggacttgaagcacttgatttattat
cgtttcaatacgggtccggttgggaagggacctggatgtggtttctgggcaccaatgtgg
agggtttggcttttcttccttcgtggtattgtgcctttgctggagaggtggttgggaaat
ctgcttgcaaggcagtttgagggtcgtcactccaaaggcgtggcaaagactgttactaag
cagcgtgttgaaagtcacttcgacttggagcttcgtgctgctgttatgcatgatgttctt
gatgcaatgcctgagggtattaagcaaaataaagcgagagtcattttgcagcatttaagt
gaagcttggcgttgttggaaagccaacattccttggaaggttccaggtctgcctgttcca
attgaaaatatgatccttcgatatgtcaagtcaaaggcagattggtggacaaatgtagcc
cattacaaccgtgaacgtatcaggaggggagctacagttgataaaactgtttgtcgtaaa
aatcttgggaggttgactcgcctatggcttaaggcggagcaagaacgtcagcacaattat
cttaaggatgggccatatgtcacaccagaagaagctgtggctatttacaccactactgtg
cattggctggagtcgagaaagttttctcctataccttttcctcctttgtcttacaaacat
gacaccaaactgctgattcttgctctggagaggctgaaggaatcatatagtgttgctgtt
agattgaatcagcagcaaagagaagagctgggtcttatagagcaagcttatgataaccca
cacgaggctttatcgagaatcaagcgtcatctgctcactcagcgtgcgtttaaagaagtt
ggcattgagttcatggatttgtatagttacctcattcctgtttatgagatcgagcccctt
gagaagattaccgatgcttatctagatcagtatttgtggtatgaaggggataagaggcac
ctattcccaaattgggttaagcccgcagataccgaaccacctcctcttttggtttataaa
tggtgtcaaggtatcaataacttgcagggcatatgggacacaagcgagggacagtgtgtg
gttatgctgcagacgaaatttgagaagttctttgagaagattgatttgacaatgctaaat
agacttttgcgtttaattcttgaccacaatattgctgactacgtcactgcaaagaataat
gtggttttgtcatacaaggatatgagtcatacaaactcttatgggctcatacgcgggctt
caatttgcctcatttgtggtacagtattatggtcttgtgttggatcttcttctcttgggt
ttgacacgtgccagtgaaattgctggtccacctcaaatgccaaatgagtttatgacttat
tgggatacaaaggtggaaaccaggcatccaatccggctgtattctcgttatattgacaag
gtgcacataatgttccgcttcactcacgaggaagcacgggatcttatccagcggtatctt
actgagcaccctgaccctaataatgagaatatggttggatacaacaacaagaaatgctgg
ccaagagatgctagaatgaggttaatgaaacatgatgtgaacctggggagaagtgttttc
tgggacatgaaaaatcgccttccacgaagtattactaccttagagtgggagaatggtttt
gtgtctgtatacagtaaggataatcctaaccttctttttagtatgtgtgggtttgaagta
aggatattgcccaagattagaatgacacaagaggcatttagcaacacaaaagatggtgtt
tggaacttgcaaaatgagcaaactaaggagcgtactgctgttgccttcttgagggtggat
gacgaacatctgaaagtgtttgaaaatcgtgttagacagattcttatgtcttcaggatct
actacgtttacaaagattgtgaacaaatggaacactgccctgattggcctgatgacatac
ttccgtgaggcaactgtacatactcaggagctgttagatctactggtgaagtgtgaaaac
aagatccagactcgtataaagattgggttaaactcaaaaatgcctagcaggtttcctcct
gttatattctacacaccaaaggaaatcggtggccttggaatgctctctatgggtcacatc
ttaattccacaaagtgaccttcgatatagtaagcagactgatgttggtgtgacccacttt
aggagtggaatgagccatgaagaggatcagctgattccaaatctttatcgttacatacag
ccttgggaaagtgagttcattgattctcaaagagtttgggctgagtatgcgttgaagagg
caggaagctcagtcacagaataggcgtcttactttggaggatctggaagattcttgggac
cgtgggatacctagaatcaatactttgtttcagaaggaccgtcatactttggcctatgac
aaagggtggagagtacgtaccgatttcaagcaatatcaagtgttgaagcagaatcctttc
tggtggactcatcagcgccacgatggaaaactatggaacctgaataattacagaactgat
gtcattcaggcattaggaggagtggaaggaattttggagcacactctattcaagggtacg
tatttccctacgtgggagggtctcttctgggaaaaggcttctggttttgaggaatcaatg
aagtacaaaaagttgactaatgcacaaagatccggtttaaatcaaatccccaaccgtagg
tttactctatggtggtctcctacaataaatcgtgccaatgtttatgtgggtttccaggtg
cagcttgatttaactggaatattcatgcatgggaagattcctacgcttaagatttcttta
attcagattttccgtgcacatttatggcaaaagatccatgaaagtgttgtcatggatctt
tgtcaagttcttgatcaggagttggatgcgctggagattgaaacagttcaaaaggaaacc
atccatcctcgaaagagttacaaaatgaatagctcttgtgcggacatccttctttttgct
gcacataggtggcctatgtcaaaacccagtttggtggcagagacgaaggatgtctttgac
cagaaggcaagcaacaaatactgggtagatgtgcagcttcgttggggggactatgattct
catgatattgaacgttacaccagagccaagtttttggattacaccacagataacatgtct
atctatccatctcctactggagtcatgatagggcttgatctggcttacaatttgcattct
gcttttggtaactggtttcctggttcaaaacctctgcttgcacaggctatgaacaagatt
atgaagtcaaatcctgcgttgtatgttttgagagagcgtataaggaaaggtttgcagctg
tactcttctgaacccactgagccatatttgtcatcccaaaactacggtgagatattcagc
aaccaaatcatatggtttgttgatgatactaatgtctaccgtgtcacaattcataagaca
tttgaagggaatctaaccacaaagcccatcaatggtgcgatttttatatttaatccaagg
actggacaactgtttttgaaggttattcacacaagcgtgtgggctgggcagaagcgtctt
ggtcagctggccaagtggaaaacagctgaagaagttgctgcacttgttcgttctttaccg
gttgaagaacaaccaaagcaaattattgtgacacgtaaaggaatgttggatcctttggag
gttcacttactcgatttcccaaacattgttatcaaaggaagtgaactgcaacttcctttc
caggcttgcttaaagattgagaaatttggtgacctcattttgaaggctactgagccacaa
atggttttgtttaacatatatgatgactggttgaagagtatatcttcctacactgcattc
tctcgactcatcctcattcttcgttcacttcatgtcaacaatgaaaaggctaagatgttg
ctaaaacctgacagaactgttgtcactgaaccacatcacatatggccttctctcacagat
gatcaatggatgaaggttgaggttgccttgagggaccttatcctttcagactatgccaaa
aagaacaatgtgaatacatctgccttgacgcaatctgagattcgagatattatccttgga
gctgagatcactcccccatctcagcagagacagcaaattgccgagattgagaaacaggca
aaggcaaccagtcaattgacggctgtcacaacaaaaactacaaatgttcacggtgaagaa
cttatcgtcagcaccacgagtccgtatgagcaagaaaagtttagctcaaagacagattgg
cgtgtcagagctatatctgctacaaatctctacttgagagtaaatcacatctatgttaac
tcagaggacattaaggaaactggatacacttacatcatgccaaagaacattttgaagaag
tttatatgtatagcagatttgcggacacagattgcaggatacttgtatggcgtaagcccg
cctgacaacccgcaagtcaaagagatcagatgcattgcaatgccaccacaattaggaact
caccaacaggtgaatctgcctttgcagctcccagaacacgatttcctgaatgatttggag
cctctagggtggatgcatacacagccaaatgaacttcctcagttatcaccacaggatgtg
acaagtcatgctcgaatcttggagaacaacaaacagtgggatggagagaaatgcataata
ctaacatgcagtttcaccccggggtcgtgttccttgaccgcctacaagcttactccagca
ggttatgaatgggctcgtgcacaaaaggatactgggaccagccttcatggctaccttcct
actcattcggagaaggtgcagatgctcctcagtgaccggtttctcgggttttacatggtt
cctgatagcagtccgtggaattacaacttcatgggagctaagcacgcacccaacctgaaa
tacggtgtcaaacttgggacgcccaaagagtactaccacgaggagcaccggcccacacat
tacctcgaattcatcaaaatggaggagggagatagtgtcgaggtagagagagaggataag
ttttcttaa
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