Silene latifolia (white campion): 141600034
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Entry
141600034 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141600034 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141600034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slaf03000
]
141600034
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141600034
04121 Ubiquitin system [BR:
slaf04121
]
141600034
Enzymes [BR:
slaf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141600034
Transcription factors [BR:
slaf03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
141600034
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141600034
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
141600034
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141600034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
RNHCP
Motif
Other DBs
NCBI-GeneID:
141600034
NCBI-ProteinID:
XP_074276298
LinkDB
All DBs
Position
9:complement(121843023..121853908)
Genome browser
AA seq
1002 aa
AA seq
DB search
MTDEVDKTCPLCAEEMDVTDQQLKPCRCGYEVCVWCWHHIMEMAEKDETEGRCPACRTPY
DKERIVGTAANCERLVAEVSIEKKHKTQKAKIKTSESRKQLTSVRVIQRNLVYIVGLPLD
LADEDLLQRKEYFGQYGKVSKVSISRTSAGTIQQFANNTCSVYITYAREDEAVRCIQSVH
AFILDGRPLRACFGTTKYCHAWLRSVPCSNPDCLYLHEIGSTEDSFTKDKDEFISAYSRV
QQITGVTNNMQRRSGSVLPSPADDYCDNSSTVTGKPVVKSSSNSSVNITKGSLPSSSSGK
SGGLPPAASWGARASTCNTPAVCLATSNGPTKQKAQMLLGQPVIDAVVSGTPQTSNVASD
LGKSNDIDEETHTKHTKCKMDALANVKQRSGFNSKTSVSETSSTAPAPAVKSTNQQSCSL
ETVCYEGEGSMPQNTAYSFDKQPCSSIECEQESSTVDINIQNLPNGMSSVSVDKQPNGDY
SAVLGPIGLSLENFISHRDLGLQWHESEKHQQCSGASLTATTELLNLKSDVQAPTIVQNM
TSETEDDFDNQRLRDAVVSQAPGQASSHILNHLRAPLQLQLDAKCTGNSTVNPPIVNTVS
EDMLELNLPNASVSSNGFLQHLVNESFALDNSLLNGIHSNHLGRSNDEVVRIDSKLALDM
GESNIISNILSLDLDSWDDSLTSQNLAKLFTDKQEYSIKSANSWKSQISNQSRFSFARQE
DSMNHLFHTEPTLVNNGHTTINPAFGQGFVENRDPYLDRLGNGFGIPHCNMELSDNLVGG
PSAFPSSKLSSSRSQISAPPGFTVSSMPPPPGFSSQERSDRSFDFLDPGNQMHEYPFFRN
SYQTPSNGNISPANDIEFIDPAILAVGKGRLPTGANILSADMRPNFHLQTPGFEEDLRLQ
FLMQRSISPHQNLRYTDVRDNLSPPNEAYRFNYRYMEQPQANNVTPFSQYSLQQPRNTVV
SNGLWDGWSEMQSPNDIGIAELLRNDRLGFNKFHSGYEDSKF
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaggttgacaagacctgtcctctctgtgctgaggagatggatgtgactgat
caacaactgaagccgtgcagatgtggctacgaggtttgtgtatggtgctggcatcatatt
atggaaatggctgagaaggatgagacagaaggacggtgtcctgcctgtcgaactccgtac
gataaggaaagaatagttggaacagcggcgaactgtgaaaggttggttgcagaagttagc
attgaaaaaaagcacaagacacagaaagcaaagattaaaacatctgaaagcaggaaacag
ctaactagtgttcgtgttattcagaggaatcttgtctacattgttggtttgccacttgat
cttgctgatgaagatcttctgcaacgtaaagagtattttggccagtacgggaaggtctct
aaggtgtccatatcccgtacttcagctggcactatccaacagtttgcgaacaatacgtgt
agtgtatatataacatatgcaagggaagatgaagcagttcgatgtattcagtcagtccat
gcatttatcctggatggtagaccattaagagcatgttttgggacaacaaaatactgtcat
gcatggctgagaagtgtgccctgcagcaatcctgattgtctgtacttgcatgagattggg
tcaacagaggatagcttcactaaagataaagatgaatttatatcagcatactcaagagtt
caacaaattactggggtcactaataacatgcaacgacgttcaggaagtgttttgccatct
ccagctgatgattattgcgataatagttctactgtgacagggaaacctgtggtcaaaagc
tcgtcaaatagttcagtcaacatcacaaaaggttcgctcccctctagcagttctggtaaa
tctggcggtcttcccccggcagcttcatggggagcacgggcgtccacttgcaatacgcct
gccgtatgtttagctacttcaaatggaccaaccaaacagaaggctcaaatgttgcttggc
caacccgtgattgatgcagttgtttctggtactccacaaacttctaacgtagccagtgat
cttgggaagagcaacgatattgatgaagaaactcacacaaagcataccaaatgtaaaatg
gatgctttggctaatgtcaaacaacgctcaggttttaattctaaaacaagtgtttcagag
acatcttctacagctccagctccagctgtgaaatcaacaaaccagcagtcatgctcatta
gaaacagtttgttatgaaggggaaggtagtatgccacagaatactgcatactcttttgat
aaacagccttgttcgtctatcgagtgtgaacaggaaagttctactgtagatataaatatt
caaaatcttccgaatggaatgtcgtctgttagtgttgataaacaaccaaatggtgactat
tcagcagtccttgggcctattggtttgagcctggaaaatttcatctctcatagagatctg
ggtttacaatggcatgaatctgagaaacatcaacaatgttcaggtgcttctttgactgct
acgacagagttgctcaatttgaaatcagatgtacaagctcctaccatagtgcaaaatatg
acttctgaaactgaagatgattttgataatcaaagactaagagatgctgtagttagtcag
gcacctggacaagcatcatctcatattttaaatcacttaagggctcctttacaactgcag
ttagatgccaagtgcacaggcaattctactgtaaatccaccaattgtaaatacagtttca
gaagatatgttagaattaaatctacccaatgcatctgtctcatccaatggatttctccag
catcttgtgaatgaatcttttgctctggataattctttgctaaatggcatacatagtaat
catttggggcgatccaatgacgaggtagtccgcattgactcgaaactggctttggacatg
ggagagagcaacataatatcaaatattttgtccttggaccttgattcctgggatgattct
ctgacatctcaaaatcttgccaagttgttcactgataaacaggagtactcgatcaaatcg
gcaaattcttggaaaagtcagattagcaatcagtccagattttcttttgcaagacaagaa
gactccatgaatcatttgtttcatactgagcctacacttgtcaataatggtcacactaca
atcaatcccgcttttggtcaggggtttgttgaaaatagagatccatatctagatagactt
ggcaatggttttggaatccctcattgtaatatggagctttcagataatcttgtaggtggg
ccttctgcttttccgtccagcaaactctcttcgtccagatctcagatttcagctcctccg
ggattcactgtatcaagtatgcctcctccaccaggattttcatcacaagagagaagtgat
cggagttttgactttttagacccgggaaaccaaatgcacgaatacccgttctttagaaat
tcttatcagaccccgtctaatggaaacataagtcctgcaaatgatattgaatttatagac
ccagctattttggcagttggtaaagggcggcttcctacaggagctaacattttaagcgca
gacatgaggccaaatttccatttacagactcctggttttgaggaggatttgagacttcag
tttctgatgcaaagatctatatcccctcatcagaatcttagatataccgatgttagagat
aacttatctcctcctaatgaagcttatcgttttaactatcgatatatggagcagccacaa
gctaacaatgttacccccttctcacaatattcacttcagcaacctagaaataccgtggtc
tccaatggtctttgggatggatggagtgaaatgcaatctcccaatgacataggcatagca
gagctccttagaaacgatagactgggatttaacaagttccatagtggttatgaagattct
aaattttaa
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