Silene latifolia (white campion): 141600184
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Entry
141600184 CDS
T11116
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slaf03021
]
141600184
Transcription machinery [BR:
slaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
141600184
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
141600184
NCBI-ProteinID:
XP_074276465
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Position
9:166628474..166633673
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AA seq
555 aa
AA seq
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MGLGCKLNMIRWCLPSLHSPSPSHSSSTSKFAVRGKDLDFGLAKLPFLMINFDESEMVIK
DSLRLHACSSSAIRTVENDYANLELMISKRSDKHLRNTVYDTQVPSDKDTSAFFRSVQAC
SSSYFHLLMENINMLENKFSDLDIVKLERDILLQLERLGALELFRACLSRTLEGSTITHM
SNPKSQVPRYNQDNRNLDNDHIKVVQSKRKEERKSKQQKRLQAASKSCACRSETFVEEVM
NTVVPSVAKKTKATRKRVEFAKNEAELAKGIKVVAKLEKVKVALEGDYGRAVTLRCWAEA
AGIDEKMLQNDLRFGWYCRDELLKSGRSLVLYLARNYRGLGVAHEDLIQAGNIGILQGAE
RFDHTKGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPLTLSTAINRIQKARKALKRSRGKH
PDDVEVANFTGLSVDKIRAADKCLRIVGSLDQKVGNFIDMKYLECTSDTTIEIPEKTVMK
QQMRNNIMKLLDELDPKERRILVLRYGFGSHCMSLHEIGKIFEVSKEWIRKIEKKAFSKL
KDEEIQISLSHYLNL
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgggttgcaaattgaacatgatcagatggtgtcttccttcattacactcgcct
tccccttctcattcttcttctacttctaaatttgcagtgcggggaaaagaccttgatttt
ggcctagcaaagttgcccttcttgatgatcaatttcgatgaaagtgaaatggtgattaag
gattcgctgagactgcatgcatgctcatcttcagctatacgaaccgttgagaatgattat
gcaaacttggagttgatgatcagtaaacgatccgacaaacatttgcgtaatacggtatat
gatactcaagtaccttctgacaaggatacatctgcattttttcggagtgtacaagcatgc
agctcgtcatattttcatttattaatggaaaatattaatatgctggagaataaattttct
gatttagacatagtgaaacttgaaagagatattctgttgcaattagaaagactaggggca
cttgagctgtttcgtgcatgcttatcgaggacgctcgagggttctactatcacccatatg
tccaacccaaaatctcaggtcccgagatataaccaagataatagaaatttggataatgat
catataaaggtggttcagtcgaagaggaaggaagaaaggaaatcgaaacaacagaagcgg
ctacaagccgccagtaaaagttgtgcttgtagatcagaaacgtttgttgaagaggtcatg
aacactgtagttccttctgttgcaaagaagactaaggctacaagaaaaagagtggaattt
gccaaaaatgaagcagaactagctaagggaatcaaggtagttgcaaaactggaaaaggtt
aaagtggctttggagggagattatgggagggcagtgactttaagatgctgggctgaagca
gctggtatcgatgagaagatgttgcagaatgaccttcggtttggttggtattgccgggat
gaactccttaaaagtggcagatcgttagtgctgtaccttgcgagaaattatcgaggactg
ggagttgcacatgaagacttaattcaggcagggaatataggaatacttcaaggtgctgaa
aggtttgaccatacgaaaggataccagttctctacatacgttcagtactggatcagaaaa
gcaatgtctcaactggtatctcggcatggaagagggataaaagttcctctgacactaagc
acagcgataaaccgcatacaaaaggctcgtaaggccttgaaaagaagtcgcggtaaacac
ccagatgatgttgaagtggccaatttcacgggtctctcggtggataaaataagagctgct
gacaaatgcttgagaattgtgggttctttagatcagaaagtcgggaacttcatagatatg
aaatatttggagtgcacatcggatacgacaatagagatacctgaaaaaacggtgatgaag
cagcaaatgagaaataatataatgaagcttctagacgagctggatccaaaagaaaggcgg
attctggtcctaaggtatgggtttggtagccattgtatgtcgcttcatgagattggaaaa
atatttgaggtaagtaaagaatggataagaaaaatagagaagaaggctttcagcaagttg
aaggatgaagaaattcagataagtttaagccactatttgaatttgtag
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