Silene latifolia (white campion): 141600831
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Entry
141600831 CDS
T11116
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141600831
09123 Folding, sorting and degradation
03018 RNA degradation
141600831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141600831
03041 Spliceosome [BR:
slaf03041
]
141600831
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141600831
mRNA degradation factors
5'-3' decay
Lsm complex
141600831
Spliceosome [BR:
slaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
141600831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
DUF150_C
Motif
Other DBs
NCBI-GeneID:
141600831
NCBI-ProteinID:
XP_074277188
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Position
1:19810204..19814585
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AA seq
99 aa
AA seq
DB search
MSNRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESLRDPDDPLKT
IDQTRSLGLIVCRGTAVMLVSPTDGTDEIANPFVQQDAV
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacaggaaggaaacagttctagatcttgccaagtttgtagataagggagtgcaa
gtcaagctcactggtggaagacaagtaactggaacactaaaaggatatgaccagttgctg
aaccttgtgctggatgaagccgtcgaatctctgagagatccggatgacccgctcaagact
attgaccagacccggagtcttggattaattgtttgtagaggaacagctgtgatgctagtc
tccccaactgacggaacagatgaaattgcaaatccgtttgtccagcaagatgctgtttaa
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