Silene latifolia (white campion): 141602287
Help
Entry
141602287 CDS
T11116
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
141602287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141602287
Enzymes [BR:
slaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
141602287
DNA repair and recombination proteins [BR:
slaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
141602287
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
141602287
NCBI-ProteinID:
XP_074278692
LinkDB
All DBs
Position
9:223602691..223617484
Genome browser
AA seq
517 aa
AA seq
DB search
MPLGLPHLRLFRFSSSLFFRPKLFPIQLRAMASAKRVKIDNSSLAATTPNSLKNQENKLA
DILSIKNEPGRIESMTVQQLRNALRNAGASTQGRKQELVSALKTILDKEIDDDKQSPDEH
VTDETVLTKRLPSKRNKKAVNSDIVEVTTDIEIVKRVQQKTLLLFLIICIHVCIHSQIHG
CPGRLTDLSFAGKKRSVKRKVALEAVSIHDDVAQAVDKSASEKEPWTIFAHKKPQKGWVA
YNPRIMRPPPLTRDAHFVKLMSWNVNGLRALLKLESFSALQLAQREDFDILCLQETKLQE
KDVERXRDLLEGFENSFWTCGVVKSGYCMQRIVSRIKPLSVRYGLGIPNHDAEGRVVTAE
FDSFYLLCVYVPNSGDGLRRLSYRTTEWDPSLSHYIKELEKSKCNIIGGDTNCAHQEIDI
YNPAGNKRSAGFTIEERESFENNFLSKGFVDTFRKQHPDVVGYTYWGYRHGGRKTNRGWR
LDYFLVSESLADRVHDSYILPDVLGSDHCPIGLVLKQ
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgccactagggttaccacatttgagattatttaggttttcaagtagtttgttttttcgc
cctaaattattcccaattcaactgcgagctatggcttctgctaaaagagttaaaatcgat
aattcatcacttgctgcaactactccaaactctctcaaaaatcaggagaataaattagct
gatattttaagtattaagaatgagcccggcagaattgagtctatgacggtccaacaactt
cgaaatgcattaagaaatgctggagcttctacccagggccgtaaacaagagcttgtttca
gcgttgaaaactattttggataaagaaattgatgatgacaaacaatctcctgatgagcac
gtcacagatgaaactgtattgacgaaacggctgcctagcaaaagaaataaaaaggctgtt
aactctgacattgtggaggttactacagatatcgaaattgtgaagcgagtacaacaaaaa
acattgcttctctttcttataatatgtatacatgtttgtattcattcccaaattcacggg
tgtccgggtcgtttaaccgacttaagctttgcgggtaaaaagcgatctgttaagagaaaa
gtagctctagaagctgttagcattcatgacgacgttgctcaagcggttgataaatctgcc
tctgaaaaagagccatggaccatatttgcccacaaaaaacctcagaaaggatgggttgct
tacaatccaagaataatgaggccaccgcctctaacacgtgatgctcatttcgtgaagctg
atgtcttggaatgtaaatggtctgcgggcattattgaagttagagagtttctctgcactc
cagctcgcacaaagagaggatttcgatatcttgtgtttgcaagagacgaaattacaggag
aaggacgttgaacganntcgagatcttttggaaggctttgaaaatagcttttggacttgc
ggtgtagtaaaaagtggatactgcatgcaaagaattgtttcacggataaaaccactttcc
gtaagatatggccttggcatacccaaccacgatgccgaggggcgtgtggtgactgcagag
tttgactctttttatttactgtgtgtatatgttcctaattctggggatggactaaggaga
ctgtcgtacagaactacagaatgggacccatctctcagccattacattaaggaactagaa
aagtcaaaatgtaatattattggtggtgatacgaattgtgcacatcaagagatcgacatt
tacaaccctgcgggaaacaaaagaagtgctggattcacaattgaggaaagggaatcattt
gagaacaactttctatcaaaaggatttgtggatacgtttagaaagcagcatccagatgtt
gttggctatacttactggggctaccgacatggtggacgtaaaactaatagaggatggaga
cttgactatttcctagtttcggaatcacttgcggacagagttcacgactcttacatcctc
cctgatgtccttggtagtgatcattgtcccatcggccttgtactaaagcagtag
DBGET
integrated database retrieval system
