KEGG   Silene latifolia (white campion): 141602603
Entry
141602603         CDS       T11116                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
slaf  Silene latifolia (white campion)
Pathway
slaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    141602603
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slaf03019]
    141602603
Messenger RNA biogenesis [BR:slaf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     141602603
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_Aladin WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_SPT8 eIF2A Beta-prop_DCAF12 NBCH_WD40 Beta-prop_WDR35_TULP_N CFAP43_N Beta-prop_HPS5 Beta-prop_WDR11_1st Cytochrom_D1 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Ge1_WD40 Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_LRRK2 Tricorn_2nd Beta-prop_NUP159_NUP214 Beta-prop_ACSF4 Lactonase DUF5711
Other DBs
NCBI-GeneID: 141602603
NCBI-ProteinID: XP_074278901
LinkDB
Position
1:32785124..32789811
AA seq 326 aa
MKIAGLKSLETAHEDSIWATTWVPPSTTRPHALLLTGALDETVKVWRTGPTDDAIVLERT
NTGHSLGVVSVAAHPSGVIAASASLDSVVRVFDVDTNHTLATLQAPPSESWQMQFNPKGT
LLAIAGGSSTSVKVWDTATWQLVSTLTIPRSENSKPSDKSATKKFALSVAWGPDGRRLAC
GSMDGTISVFDMDTRKFLHHLEGHLMPVRSLVFSPVDPRVLFSGSDDGHIHMYDAEGKSL
IGSLSGHSSWVLSVDASPDGAAIASGSSDKSVKLWDLGMRAAVQSMTNHTDMVWGVAFRP
PGGTGLRAGRLASVSDDKSISLYDYS
NT seq 981 nt   +upstreamnt  +downstreamnt
atgaagatagcagggttgaaatccctagaaacagcacacgaggactcaatatgggcaaca
acatgggtcccaccctcaaccaccagaccccacgctctactcctcaccggcgccctcgat
gaaaccgtcaaggtctggaggactggtcctaccgacgacgccatcgtcctggagcgcacc
aatacaggtcactctctcggtgtcgtctccgtcgctgcacacccttctggtgttatcgct
gcctccgcctccctcgacagcgttgtccgtgttttcgatgtcgataccaatcatactctt
gctactcttcaggctcctccttctgaatcctggcaaatgcaatttaaccctaagggaact
ttgctagcaattgctggagggagcagcacatcggtcaaggtgtgggacactgcgacctgg
caacttgtttccaccctaacaattcctcgttcggaaaacagcaaaccatctgataaaagt
gccactaagaaatttgccctctcagttgcatggggcccagacgggagacggttggcatgt
ggctctatggacgggacaatttccgtctttgatatggatactcgtaagttcctacaccac
cttgaaggtcacctcatgccagtgcggagcctcgtgttttctcctgtggatcctagagtc
cttttctcggggtctgatgatgggcacatacacatgtatgacgccgaaggaaagagcttg
attgggtctttgtcgggccactcaagctgggttctgagcgtggatgcaagcccggatgga
gctgctattgcaagtgggtcaagtgataaatcggtgaagctgtgggaccttggcatgcga
gccgctgtacagagcatgacaaaccacactgacatggtttggggtgttgcatttcggcct
cctggtgggactggattacgagccgggagactcgcaagtgtttcagatgataaaagcatc
tcactgtatgattactcttaa

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