Silene latifolia (white campion): 141604066
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Entry
141604066 CDS
T11116
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
141604066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141604066
04121 Ubiquitin system [BR:
slaf04121
]
141604066
03036 Chromosome and associated proteins [BR:
slaf03036
]
141604066
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141604066
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
141604066
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
141604066
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
141604066
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
141604066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-RING_UBOX
zf-RING_6
zf-C3HC4_3
zf-C3HC4
zf-RING_5
PHD_NSD
zf-C3HC4_2
zf-C3HC4_4
zf-RING_2
PTCB-BRCT
RTT107_BRCT_5
Prok-RING_4
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
141604066
NCBI-ProteinID:
XP_074279045
LinkDB
All DBs
Position
1:39077215..39082277
Genome browser
AA seq
698 aa
AA seq
DB search
MAEKRTQTQTHARLLNPWVLHLQKLGLELKCPLCLNLYNKPMLLPCNHIFCSRCVPESNS
FGSECSICKQPYVEQDLRGAPYIGNLVNIYTSLDASFSMHMLNPDVRRGLVQCPIPAQRC
SKDPIDSTSLGNLACGTTSVPLRVNEQVVVPNSTPVMTMLERCTSFGNTGLGPGVLEHNS
PTSVTSFSQGRALQQKQHVAVDVDMNRVELSPDSPPSSGASKGAEIDSCDQERNNDTAGK
CQSKKSLKREVDDLGTPGTGDLSDSYCKKQKQTNLSQVELSQSPSPSTGLNQQTSVSTGS
ATAKTECAPNFKCAFCQTGKITQGSGQLHHFANGKQVFGKEAGRSNVTHLHQSCIEWTPQ
IYYENDTTIRNVDKELARAEKLKCTSCGLKGAALGCFAKSCRRTYHAPCAYEIPECRWDD
EDFLMLCPVHSSIKFPSEKSKKSAAKKASTVKIHDELKNKDLSSSTLPAVEFSSWMLSST
QNWVLCASSLSADEKTMLVKFANLCGATVTRNWTPEVTHVIAGTDANGACSRTLKVLMAI
LKGRWILKTDWIRACMELKRPVEEEPYEINLDNHGCCDGPRTGRLRALNNVQNLLNGMKF
YFSGDFLAKYQWDLQDLIIAGGGAILENKEQLLHCSSNGLGTTVVVYNADAVTGTGDVST
VLERQLEAEMVAAESDCHVVPHTWLLGSIASNKLHPFV
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaaacggacccagacacagacccatgcccgtttactaaacccatgggtcctt
catcttcagaaacttggccttgaacttaaatgccctctttgcttgaatttgtacaataag
cccatgttgttaccttgtaaccacattttctgcagtcgttgtgtacctgaatcaaattca
tttgggtcggagtgttcaatctgcaaacagccgtatgttgaacaagatttgaggggagct
ccttatattggaaatttggtgaatatttacacaagcctggatgcttctttctcaatgcat
atgcttaacccagatgtaagaagaggcttagtacaatgccctattcctgcccaaagatgc
tccaaggacccaattgattcgacttctctagggaatttggcttgtggaaccactagtgtt
ccattgagggttaatgagcaagtcgtggtaccgaatagtactccagtgatgacaatgcta
gagaggtgtactagctttggaaatactggtttgggacctggggttttggagcacaattct
ccgactagtgtgacttcattttctcaaggaagagctttgcaacaaaagcaacatgttgct
gttgatgtagatatgaaccgggtggagttgtccccagatagccctccatcttctggtgcc
agcaagggtgctgagattgacagctgtgatcaagaaaggaacaatgataccgcaggaaaa
tgtcaatctaagaaatctttaaaaagagaagttgatgacttaggaacaccaggaacaggt
gacctttctgattcatattgcaagaagcaaaagcagacaaacttgagccaagtagaacta
tctcagagtccttccccatcaacgggtttgaatcagcaaacatctgtatcaaccggctct
gccactgctaagactgaatgtgcacctaacttcaaatgtgcattctgccagacagggaag
attacacagggtagcggccaactgcatcattttgctaatggtaaacaagttttcgggaaa
gaggcaggtcgttctaatgtcacacatctgcatcaaagctgcatagaatggactccgcaa
atctattacgagaatgacactaccataaggaacgtagataaagagctagcaagggccgaa
aagctcaagtgcaccagttgtggccttaagggagctgcacttggttgttttgcaaaatct
tgtcgtagaacgtatcatgctccatgtgcatatgagattccagagtgtagatgggatgat
gaggatttcctgatgctttgtcctgttcattcttcaataaagtttccaagtgagaaatcc
aaaaagtctgcagccaaaaaggcctcaacagttaaaatccatgatgagctgaaaaacaag
gatttaagttcatcaactctcccagctgttgaatttagttcttggatgttgtcttctact
caaaattgggttctttgtgcatcatctctctcagctgatgaaaagacaatgctggtcaag
tttgcaaacttgtgcggcgcaactgtgacaaggaactggactccagaggtcactcatgtg
attgcaggaacagatgcaaatggggcctgcagtaggacattgaaagttcttatggccatt
cttaagggaagatggatacttaaaaccgactggattcgagcatgcatggaactaaaacgt
ccagttgaagaagagccttatgagattaatcttgataaccacggctgttgtgatggcccc
agaactggcagactgagagctttgaataatgtacaaaatcttttaaatggcatgaaattt
tatttcagtggtgactttttagctaaataccaatgggatctccaagatctgattatagct
ggtggaggagccatccttgaaaacaaagaacaactactacattgtagcagtaacggactt
ggaaccacagtagttgtttacaatgccgatgcagtgacaggtaccggagatgtctctact
gtcttagagcgacagctagaagctgagatggtggctgctgaaagcgattgccatgtagta
ccacatacttggcttttgggctccattgcctcaaataagctgcacccttttgtctga
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