Silene latifolia (white campion): 141604680
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Entry
141604680 CDS
T11116
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03420
Nucleotide excision repair
slaf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
141604680
09124 Replication and repair
03420 Nucleotide excision repair
141604680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141604680
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141604680
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
141604680
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
141604680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
WD40_RFWD3
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
141604680
NCBI-ProteinID:
XP_074279233
LinkDB
All DBs
Position
10:2253016..2259835
Genome browser
AA seq
457 aa
AA seq
DB search
MSWKEIASREQGKQRPNSFSRRFNSRRISSLQLSNFKEFVSPHRGAVNSLQVDLTEGRYL
LSAASDASAAVFDVQRPSEFEGGGLLAKHKCIFLIDKQHEQGHKYAISSATWYPIDTGLF
ITGSYDHHINVWDTNSTQVVMNFKMPGKVYKTAMSAVATTHMLIAAGTEDVQVRLCDIAS
GAFAHTLSGHRDGVMTVEWSTSNEWVLMTGGCDGAIRFWDIRRAGCFLVLDQSKSQLGRR
PPLLQRSTTNKGAMSRDPGQSSSANSRGHQKKLVSENGTKVSAMSKTGSQQKGYVKQRLH
PGMMSSKDRATAHYGAVTGLKTTEDGMHLLSAGSDSRLRLWDIESGCNTLVNFETARLQN
SKGIQLAVAQDASLVFAPCMTSVKAFDLWSGQTSYTFRGHYECVNCCWFAAQDQELYTGG
NDRQILVWSPPNSSPDEPDERNTKGKFPLKDEDNWSD
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtggaaagaaatagcaagtagagaacaaggcaaacaacgacctaattcattttcc
cgacgctttaattctcgacgtatttcatctcttcaactttctaactttaaagagttcgtc
tctcctcatcgcggtgctgtcaattctctccaggttgatttgacagagggacgatatttg
ctttctgctgcatctgatgcatctgccgctgtttttgatgttcaacgcccctcagagttt
gagggtggtggccttctagcaaagcacaagtgcatcttcctcattgataaacaacatgaa
cagggtcacaaatatgccatatcttcagcaacttggtatccaattgatactggattattt
attactggttcatatgatcatcacatcaacgtctgggatacgaactcaacacaggtggtt
atgaactttaagatgcctggaaaagtgtataagacggctatgtctgctgttgctaccact
catatgctaatagctgctggcactgaagatgttcaagttcgtctttgtgatattgcatca
ggggctttcgctcatacattgtctggccatcgtgatggtgtaatgacggtagagtggtct
acatcaaatgagtgggttttgatgactggaggctgcgatggtgcaatacgtttttgggat
attagacgggctgggtgtttccttgttttagatcagtccaagtctcaacttggcagacgg
ccgccacttttacagcgttcaactacaaataagggggcaatgtcaagggaccctgggcag
agttcatctgcaaatagtaggggacatcagaagaaacttgtatctgaaaatggtacaaag
gtttcagctatgtctaaaacgggctcccaacaaaagggttatgtgaagcaaaggctccat
cctggaatgatgtctagtaaagatcgtgctactgcacattatggagcggtaacaggtcta
aaaacaactgaagatggcatgcatcttttgagtgcaggttcagattctagattaagattg
tgggatattgaatctggttgcaacactcttgtgaactttgaaactgctcgtctgcaaaac
agtaaagggatacagttggctgttgcgcaggacgcatcacttgtttttgccccatgcatg
acttctgtcaaagcatttgatctttggtctggtcagacatcttatacatttcgtggccac
tatgagtgtgtcaattgttgctggttcgctgcacaagatcaggagctgtacacgggtggc
aatgataggcagattcttgtctggtctccgcccaattcaagtcctgatgaaccggatgag
aggaacacgaaaggaaagttccctcttaaagacgaggataactggagtgattag
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