Silene latifolia (white campion): 141604778
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Entry
141604778 CDS
T11116
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
slaf04131
]
141604778
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slaf04147
]
141604778
Membrane trafficking [BR:
slaf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
141604778
Exosome [BR:
slaf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
141604778
Exosomal proteins of bladder cancer cells
141604778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
141604778
NCBI-ProteinID:
XP_074279371
LinkDB
All DBs
Position
10:4241123..4248078
Genome browser
AA seq
1214 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRAVHFH
NSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSTSDDQTIRIW
NWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDISTLRKKTVSPADDILR
LSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHARQDIIVSNSEDKSIRVWDATKRSSLQTFRREHDRFWILTAHP
EMNLFAAGHDSGMLVFKLERERPAFAVSGDLVYYVKDRFLRVYEYSTQKDTQVIPIRRPG
GSILNQSPRTLSYSPTENAILIASDIDGGSYELYVVPKDGLGRGDIVQDAKRGLGNSAVF
IARNRFAVLERSSNQVLVKNLKNELVKKVAIPVLTDAIFYAGTGSLLCRAEDRVVVFDLQ
QRLILGELQTTLVRYVIWSTDMDSVALLSKHSIIIATKTLEHRCTLHETIRVKSGAWDDN
GVFIYTTLNHMKYCLPNGDNGIIRTLDVPLYITKVTGNNIYCLDRDGKNRNITIDATEYF
FKLSLLRKRYDQVMGMIKRSELCGQAMIAYLQQKGFPEVALHFVKDEKTRFNLALESGNI
EVAVASANVIDDKNHWYRLGVEALRQGNTDIVEYAYQKTKNFERLSFLYLITGNAEKLFK
MLKIAEVKNNVMGQFHNALYLGDVQERVKILETVGHLPLAYVTAKTHGLDDVADRLAAEL
GDNVPELPKGKTPSLLMPPSPISCAANWPLLTVMKGIFDGFEYGRQEAADDGEEDPGEEW
GETLDIVDNGDISSALYEEEGEEGVPEDGEGGWDLEDLDLPPEVETPKVASNGRTFVFVA
PSQGMPVSQIWANKSSLAAEHAAAGNFDTAMRLLNRQLGIKNFTPMKQLFVDLFAGSHSY
VLAFVSAPVISLALERGWNESASPNVRGPPALVFGFSQLEEKLRAGYKLTNDGKLSDALR
TFINILHSIPLVVVESRREVDEVKELIIIVKEYVLGLKMELKRRELKDDPVRQQELAAYF
THCNLQLPHVRLALLTAMTNCYKAGNLITAANFARRLLDTNPTFEKQAKTARQVLQAAER
NMKDSTQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCSSRFVPAQEGQICAVCDLAVVG
ADASGLVCSPSQIR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaaatttgaaacgaagagtaatagagtgaaaggattgagttttcatccgaaa
aggccatggatcttggcgagtttacatagcggtgttattcaattatgggattatcgtatg
ggaactcttattgatcgatttgatgaacatgacggtcctgttcgcgctgttcattttcat
aattctcagcctctttttgtttctggaggagatgattacaagattaaagtttggaattat
aaattgcatagatgcctatttactcttctcggacatcttgattatatccgtactgtccaa
tttcaccatgagtatccttggattgtcagcactagtgatgaccagaccataaggatttgg
aactggcagtcacgcacttgtgtctctgtattaaccggtcacaatcattatgttatgtgt
gcctcctttcacccaaaggaggacctagtggtttctgcttcactggatcagacagtgcga
gtttgggatatcagcaccttgaggaaaaagacggtttccccagcagatgacattctacgt
ctgagtcagatgaatacagatctgtttggtggtgttgatgctgttgttaagtatgtctta
gagggtcatgatcggggagtcaactgggcttctttccatccgacacttcccttgattgtg
tctggcgctgatgaccgtcaggtgaaaatatggcgtatgaatgatacaaaagcctgggaa
gttgacaccttgagagggcacatgaacaatgtctcttgtgtgctattccacgcgaggcaa
gatattattgtatcaaactccgaggacaaaagtattcgtgtgtgggacgctactaagcga
agtagtctccagacattcaggagagagcatgatcgcttttggattcttacagctcatcct
gagatgaatcttttcgctgctggtcatgatagtggaatgcttgtctttaagctggaaaga
gaacggcctgcctttgcagttagtggtgatcttgtgtattatgtgaaagatcgattctta
cgtgtatatgagtactcgacccaaaaggatactcaagtcatccccatcagaagacctggt
ggcagcatactcaatcaaagcccaagaactctttcttatagtccaacagagaatgctatt
ttgattgcttcagatatagatggtggatcttatgaactctatgtggtgcctaaggacgga
ttgggtaggggtgacattgtgcaagatgcaaagagaggtcttggtaattcagctgtcttt
attgctcggaacaggtttgctgtattagagaggagcagcaatcaagtgttagtgaagaac
cttaagaatgagttggtcaagaaggttgccattcctgttcttacagatgctatattttat
gcaggaacaggtagcttactatgcagagctgaggatagggtggttgtgtttgaccttcag
cagaggcttattcttggagaactccaaactactctggtcagatacgtcatctggtccact
gacatggatagcgttgctttgttaagcaagcattcaataattatagccaccaagacgctt
gagcaccgttgcacactccatgaaactatccgtgtgaagagtggagcttgggacgataat
ggtgttttcatctatacaactctgaatcatatgaagtactgcctccccaacggggacaat
ggtattattagaacacttgatgtgccattgtacatcacaaaagtgacggggaacaacatt
tactgtttagatcgagatgggaagaatcgtaatatcaccattgatgcaacagaatacttt
tttaagctatccctattgagaaagagatatgatcaggtcatgggcatgattaagcgctca
gagctttgtgggcaagccatgattgcttatcttcagcagaaaggttttccagaggttgct
cttcattttgtcaaggacgagaagactcgcttcaacttggccttagagagtggtaatatt
gaggttgctgttgcttcagctaatgtgattgacgacaagaatcattggtacaggttgggt
gttgaggcactacgtcaaggcaatacagacatagttgagtatgcatatcaaaagacaaag
aatttcgaaaggctatcattcctttatctaataactggaaatgcagagaaattgttcaaa
atgttgaaaattgctgaggttaaaaataatgtaatgggtcagttccacaatgctctatac
ctgggcgacgtccaggagcgtgttaagattctagaaaccgtgggacatcttcctcttgct
tatgtcactgctaaaacccatgggcttgatgatgtggccgatcgtcttgctgctgaactt
ggggataatgtacctgagttgcccaaggggaaaacaccatccctcttgatgccacctagc
cccataagctgtgctgcaaactggcctctactgactgtcatgaagggaatatttgacggg
tttgaatatggaagacaggaagcagctgatgatggcgaggaagatccaggagaggagtgg
ggtgaaacccttgatattgtggataacggagatatttcttccgccttgtatgaagaggag
ggagaggagggagtgcctgaagatggcgaaggagggtgggaccttgaggatcttgacctt
cctcctgaggttgaaactcctaaggtggccagtaatggccgcacttttgtttttgtcgca
ccttcccaaggaatgcccgtcagccaaatatgggccaacaaatcatctcttgctgctgaa
catgctgctgcgggaaattttgatactgctatgcgtttgcttaacaggcaattgggcatc
aagaactttaccccaatgaagcaactttttgtcgatctatttgccggaagtcattcctac
gtgctcgcattcgtttctgcacctgtgatttccctggcgcttgagaggggttggaacgag
tcagccagccctaatgtgaggggcccacctgctcttgtatttggcttctctcagttggag
gaaaaacttagagctggctataagctaacaaatgatgggaagttaagtgacgcactccga
acattcatcaatatactccacagcattccgttggtagtggttgagtcacgaagggaggtt
gacgaagtcaaggaattaatcatcatcgtcaaagagtacgttcttgggttgaagatggag
ctcaagaggagagagctgaaagatgacccggttcgccagcaggaactggctgcatacttc
actcactgtaaccttcaattgcctcacgtgcgacttgcattactcactgccatgacaaac
tgctacaaagccgggaatctcataactgctgctaattttgcacgtcgtcttcttgacacc
aatcccacttttgaaaagcaagcaaagacagcccgacaagtactccaggctgctgagaga
aacatgaaagattccacccagttgaattacgacttcaggaatccatttgtcgtttgtgga
gcgacctatgttcctatttaccggggccaaaaagacgtttcttgtccttactgttcttca
cgatttgttccagctcaagaaggccagatatgcgctgtttgtgatctagccgttgttggt
gctgatgcatccggcctggtttgctccccgtcacagatacggtag
DBGET
integrated database retrieval system
