Silene latifolia (white campion): 141604805
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Entry
141604805 CDS
T11116
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
slaf
Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141604805
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
141604805
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_SCAP
TRM82_WD
WDR90_beta-prop_4th
ARM_TT21_C
CFAP70_mid_TPR
Beta-prop_IFT140_1st
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
141604805
NCBI-ProteinID:
XP_074279404
LinkDB
All DBs
Position
10:complement(4817751..4831384)
Genome browser
AA seq
769 aa
AA seq
DB search
MDFSSFGFHDGNITNLIDHRTIDLRHDVNHKLQMHSSMVQRLSLERELEGHLGCVNTIAW
NSAGSLLISGSDDTRINIWRYSDRELINSIDTGHSSNIFCTKFVPETSDEIVASGAGDAE
VRVFNVSRLSGSRAEETSITPSAHFQCHTRRVKKLAVEVGNPNVIWSASEDGTLRQHDLR
EGCSCPPAGASNQECRNVLLDLRGAAKKSLAEPPKQPLLLKTCDISATRPHQLLVGGSDA
FARLYDRRMLPPLSSCTRKISPPPCVNYFCPMHLSERGRSSLSLTHVTFSPNGEEVLINY
SGEHVYLMDVNQGSGCVQYTSGDVAKLSSFSPILNGVNMSHPRGATSDENSTVRSCSTVQ
VVELSNQLKKCRKLVKLAKNCLHDGSNYYYGIEACNEVLDGGYKIDPKLEHECLFLRAAL
LLKRKWKNDAHIAVKDLNKALKIDSSSLEALLCMSEALSLLGKHKEALDFALAAQCLAPS
SVEVAERVEIIQKQLSEAEDEKNKPNDRGHKFESRAGRGLSLSDIIYRSEGNSDASQDGP
RSEREDSDYDEELELDFETSASGDEGRDADPNVLHGSLNLRFHRRPESSREAVGLNGSCG
SPSYSSQNDKKSYQPETVIDMKRRYIGHCNVGTDIKQASFLGQTGNYVATGSDDGRWFIW
EKKTGRLIKMLMGDEAVVNCVQCHPFDTVVATSGIDSTIKIWTPTAPDPSMVAGGSAGPD
TDNFLEAMESNQQRLCRTREAILPFELLERFQIHDFAEGTMHPFECAQS
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcttcatttggatttcatgacggtaacattaccaatttgattgatcaccgc
accattgacttacgccatgatgtcaatcataaattgcaaatgcactcgtctatggtacaa
aggctgtcactggaaagagagttggaggggcacctaggctgcgtcaatactattgcgtgg
aactcagcaggttctctcctgatatctggatcagatgatactcgaattaatatttggagg
tattctgaccgtgagcttataaatagcattgacacaggccattcctccaacatattttgc
actaaatttgtacctgagacttctgacgaaattgttgcttctggagctggtgatgcggag
gttcgtgtatttaacgtttctcgcttaagtgggagtagggccgaagagacgtctataact
ccctcagctcattttcaatgtcacacaagaagggttaaaaagttggcggttgaagttgga
aatccaaatgtgatttggagtgctagtgaagatgggactctgaggcagcacgatcttcgg
gaagggtgttcttgtcctcctgctggagcttccaatcaggaatgtcggaatgttctcctt
gatttgcgtggcgctgcgaaaaagtctttagctgaacctcctaaacagcctcttctactc
aagacttgtgatatcagtgctaccaggcctcatcaactccttgtcggaggaagcgatgcg
tttgctcgtttatatgatagaagaatgctgccgccactttcatcctgtaccagaaaaatt
tcaccacctccatgtgtcaattatttttgccctatgcatctctctgaacggggacgatca
agcttaagtctgactcatgtgactttcagccccaatggagaagaagtccttataaactac
agtggagaacacgtgtacctgatggatgtaaatcaaggtagtggatgtgttcagtataca
tctggagatgttgcaaagctctctagcttttctcctattcttaatggtgtgaacatgtcc
catccaaggggtgctactagtgatgaaaattcaactgtccggagctgttctactgtacag
gttgttgaactctcaaatcagcttaaaaagtgcagaaaactagtgaagcttgcgaaaaat
tgcttgcatgatgggtcaaattattactatggtatcgaagcatgcaacgaagtactggat
ggaggttataaaatcgatccaaagcttgagcatgaatgtcttttcttacgagctgcattg
ctacttaagaggaagtggaaaaatgatgctcacattgctgttaaagatctgaacaaagct
ctaaaaattgattcatcttcattggaagcactcttgtgcatgtctgaagcattatcgctg
ttgggcaagcacaaagaagctctagattttgctcttgcagcccaatgtctggccccgtca
agcgttgaagtcgcagaaagggtggaaataatacagaagcagctatcagaagctgaagat
gaaaagaacaagccaaatgataggggacataagtttgaatcacgagctggcagaggatta
tcactaagtgacataatttatcgctcggaaggaaatagtgatgcttcacaagatggtccg
agatctgaaagagaggactctgattatgatgaagaactagagttagactttgagacgtcg
gcatcaggggacgagggtcgtgatgctgaccccaatgttcttcatggaagtttgaatttg
agattccatagaaggcctgaatcatcaagagaagctgttggtttaaatggctcatgcggg
tctccttcctattccagccaaaatgataaaaaaagctaccagccagaaactgtcattgat
atgaagcggcgatatattgggcactgtaatgtaggaactgacataaaacaagccagcttt
ttaggccagactggtaactatgtggctactggaagtgatgatggtagatggttcatttgg
gaaaagaaaacgggtagattgataaagatgctaatgggtgatgaagctgtggtcaattgt
gtccagtgccatccatttgacactgttgtggctactagtggaatagatagcactattaag
atatggactccaactgctccagatccgtcaatggtggcgggtgggtctgcaggtccagat
acagataacttcttggaagccatggaaagcaatcaacaaagattatgccggacacgcgaa
gctattctgccatttgagctactagagagattccagatccatgattttgcggaaggaact
atgcatccgtttgagtgtgctcagagctag
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