Silene latifolia (white campion): 141604964
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Entry
141604964 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141604964 isoform X1
KO
K24155
rabconnectin-3a
Organism
slaf Silene latifolia (white campion)
Pathway
slaf04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
141604964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
slaf04131
]
141604964
Membrane trafficking [BR:
slaf04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
141604964
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
141604964
RAVE complex
141604964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_WDR3_2nd
Beta-prop_WDR5
WDR55
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Motif
Other DBs
NCBI-GeneID:
141604964
NCBI-ProteinID:
XP_074279657
LinkDB
All DBs
Position
10:8768262..8787982
Genome browser
AA seq
2498 aa
AA seq
DB search
MTATHHLPLHLINTATIPPSPTVSSTTGSTVADFLPDFAGYSWVAYAASSLLVISHFPSP
LSPHQSLLQPLFRQVIPLSPPAAVSAVAWSAAVPSSGDLAAVVDRRVFLFRYDSSPGSFC
WSQTDLLAQCAKVDAIAWTNSGDGIISAGAEVILWKRDIKSWEIAWKFKTKVPQTLVSTT
WSLEGPLATGAYPTQLHDNRLGSTTCNTSHYVTVYHYDGKSGCVSSELRHPQPVFAIQWR
PSGGSQANRAALYAPRHVVLTSCLDGTVRLWSEVDGSRIRKGAKDNQDASTSRLSFCVVG
VIEINHSLNGTLGTDIFLTWALDLEGLVCVGDGQLFCTEKNQNDEVGKCEWLIGLGPGKI
VTFWAVHCLDDIATMRSPRVTLWKRQELLDSDKKISCKSDHVNCTEGSRLIKAVIWRNQR
CGPPALCSVVQLSACNSLAWSVLYNQSLVKMEEKPSQTQICETDNKLYCQSGGALDTIGH
TGKLLQVAVHPFMCKVQLAVSLDSNGGLIFWSTTTSSYSISGLPSFTPPWQLIGKMILHD
NPSQEMSLNWAPLCVGEDPILLVGHIRGIDVHIIKVSNNKEQGTTCYKLCTIPFLGHDHL
NGPDKIASFPLDSTYGDSSNFDNFLLLGIWINSFRAESWKVALHCYESSGGSCRCKSDTD
KDAECSTWVYKTDFAGKRYCLVVNHCSSYFPNGCDEVTSISAVSPSSSTPSMSDVGDNLY
LNKCSYHIITGHIDGKSRIWRIKMPEVPEVRMPFELVGMLSSFTGSVSAISAADWGQKIA
TICSNDHAHMLCIWEPQHLTNGGTFELEDKIDLIEEVIALHWLVIENMLFLGVCFQNELH
IYSRRFYSVLTPTETQNWVCVAIVRNSTNIRDFLLGPNGTIVVIHVDYFSLFIPWSFPMG
NKHLSDGHVTLNSALSIQNEMDRDCPESCTRKICVCQELPSEKISDESVLFPPLTKKSYC
PVESGSQPPLITSDNSNHLLKMTEVAESICGPLPFYHPEALLMNIYSGNWKRANVAVSHL
IECLASNSASEQRPAKSSTSVSQVNLSNYFEGQVLSGRTSQVFQWSRDPSTTTWSSNSES
GLMQFSAGDMTNMFTASLSSSKSSGFQEILEKLRAHEVLTDSQKLKMFAIVDLLREMNNS
QSASAFESLDEPGRRFWCAIRLQQLEFHIRDGTKPSVEELVVDSQLIGWAFQSDCHMNLF
DTIIPTEPTWAEMRKIGIGFWFANLTDLRTKMEKLARCQYLKKRDPKDCALLYIALNRHQ
VLAGLFKISKDEKDKPLVAFLSRNFQEEKNKAAASKNAYVLMGRHQFELAIAFFLLSGDI
ISAVTVCAKNLGDGQLALVICRLVEGQSGPSERHLISKILLPSAVEKEDYWLASVLEWML
GNFFQSVLTVIGLQGYSNGTKPEKSKHPALLDPSIGQYCLLLATKNSLRNALGELNTAVL
SQWAMAMTASALKKCGLPLEALEYLSTSASNITVPDDGTVHEKYDILPRIFRPSPDDSSR
WLSNGVSNYLAYQSKLDLAMVYIAKLIREHPGWCGTCLASTDARTCSLEDKMNQLGDLES
FERKLDSSLAYLEQKFNLLRNALLDKVFVFLDSSRQLHIGYRLLQGSSSQVHLPSLTHVI
SCSSQLFNHLVKDAENLSYSLSRFVTAGSMASLHLLASPKNFQFVEFYSKGFMSSMRSLT
SALMMLCKGESEDLIRQLIMALDFCQYCLYFTSAILQRNDKALDALLQPMLASCSNGINR
EVDMPNLKAILGEVMEALNPKSSSVSTANKLVNQGVLHGDGGDKMIKIPEDERFMILGAS
LWKHLSKFIKCQLGNLTSNPMTDMTQASSVCTEPEDNDFLELVRRVMMIFTDVMENTITH
ISFHTAMQLAVFFWHKTRGGNSIGTLMWLEEFSQSKLGVFAEQSGENSGYSNATDENTVL
SSTEMLAKFFNDPKTISELLAQLPIKLSELIHLNPARGWNHFHTGALQNHEKLESYKQEG
IFDNSPRGGGGGGDKGPSVSEQSRYPLDSDVKGAALTDEVAPFRTPREIHRRNGELLEAL
CINSIEQQRAAVASNKKGIVYFDLGDGLPSKASSDFVWEEADWPKKGWAGTKSTPVPTRV
APGVGLGSSKGSHLGLGGAIVGDGSQARLGKELTGGGAFGIPDYAGIGATGMGWGIQDDF
DKSIDPPATLDNISVRALASHPSRPYFLAGSSNTHIYLWEFGEEKAVATYGVLPAANVTP
PYALASVTALQFDCSGHRFADCASDGTVCTWQLEVGGRSNVRPTDSSLCFNGHASDICYV
ATSGSIIASAGYSSNGVNVVIWDTLAPPTSSRASVMCHEGGACSISVFDNDVGTGSISPL
IVTGGKGGDVGLHDFRYIATGKTKRHKHSNTLERDADTAAIDVQLSSNAGDQNRHGMLWY
IPKAHSGSVTKISTIPNTSFFLTGGRDGDVKLWDAKRARLVHHWPKLHERHTFLQRSSHS
FGGVTRVGLTDIQVISDGFLTCGGDGSVKLVQLNNIAF
NT seq
7497 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccactcaccacctcccactccatctaatcaacaccgccaccatcccaccgtca
cccaccgtctcctccaccaccggatccaccgtcgctgactttctaccggatttcgccgga
tactcatgggtcgcctacgccgcatcatcgctcctcgtaatatctcacttcccttctcca
ctctctcctcaccaatctcttcttcaacctcttttccgtcaagtcattcctctctctcct
cccgccgccgtctccgccgtcgcatggtccgccgctgttccttcttccggcgacctcgcc
gccgtcgttgatcgccgtgtttttctcttccgttatgattcgtctcctggttctttttgt
tggagccagactgatttacttgcacaatgtgcaaaggtggatgcaattgcttggacaaac
tctggcgacggaataatatcagcaggggcagaagttattctttggaaaagggacatcaag
tcttgggaaatagcatggaagtttaagactaaggtccctcagactttagtttctacaact
tggtcacttgaaggaccattagctacaggtgcatatcctacccaacttcatgataacaga
ctaggttctacgacttgcaatacaagtcattatgttacagtgtaccactatgacggaaaa
tctggatgtgtttcttctgagttacggcacccccaacctgtttttgcgattcagtggaga
ccttctggaggaagtcaagcaaacagagctgctctctatgcaccaagacatgttgtgtta
acgagctgcttagatggcaccgtgagattatggagtgaggttgatggcagtagaatacga
aaaggtgccaaagataatcaagatgcatccacctcaaggctatctttttgtgttgttggc
gtcatcgagatcaatcattcactgaatggtactttagggaccgatatttttttgacatgg
gcattggatcttgaaggcttagtttgtgtaggcgacggacaacttttctgtactgagaaa
aaccaaaatgatgaagttggcaagtgtgaatggttgattggccttggtcccggcaaaata
gttactttctgggccgtccactgccttgatgacattgccacaatgcgatctccacgtgtg
accttatggaagagacaggaattattggattccgataaaaaaatatcttgtaagagcgac
catgtgaattgtactgaaggatctcgacttatcaaggctgtcatctggagaaatcaacgt
tgtggtccaccagccctatgctcagtggttcaattatctgcttgcaactcgttggcctgg
tcagtgttatacaatcaatcattagtaaaaatggaagagaaaccttctcagactcaaata
tgtgaaacagataataaattgtattgtcaatctggaggagccttggatactattggtcac
actggtaaacttttgcaagttgctgtgcatccttttatgtgtaaagttcaacttgctgtt
tccctggattctaatggcgggcttatattttggtcaaccactaccagctcatatagcatc
tcagggttgccgtcatttactcctccatggcaactgattggaaaaatgattctacatgat
aatccttctcaggaaatgagcttgaactgggcacctttatgtgtgggtgaagacccgatt
cttcttgttggacatattagaggaatagatgtccatatcatcaaagttagcaataacaaa
gaacagggaactacgtgctataagctttgcactattccttttctaggtcatgaccacttg
aatgggcctgataagattgcctcatttccattagactctacttatggagattcttctaat
tttgataatttcttgcttttggggatatggataaacagttttcgggctgaatcatggaaa
gtggcattgcattgctatgaatcatctggaggcagctgtcggtgcaaatctgacactgac
aaggatgctgaatgttccacatgggtctataagactgactttgctggtaaaagatattgc
ttggttgtgaatcactgctcgtcatattttccaaatggttgtgacgaagttacgagtatt
tcagcggtgtctccaagttcatcgactccttcaatgtcggatgtaggagataatttatac
ttaaataaatgttcatatcacatcataacgggacatattgatggtaaatcaagaatttgg
aggatcaaaatgcctgaagtgccagaggttcgtatgccttttgagcttgtgggtatgctt
agttcatttacaggttcagtaagtgctatatctgctgctgattggggtcaaaaaattgca
acgatatgctcaaatgatcatgctcatatgctttgtatttgggaacctcagcatctcacg
aatggtgggactttcgagttggaagataagatagacctaattgaagaagtaattgctttg
cattggcttgtgatagaaaatatgttgtttctaggggtctgcttccagaatgagttgcac
atatattcccgaagattttacagtgttttgactcctacagaaacacaaaactgggtctgt
gttgccattgtgcgtaattccactaatatacgtgactttcttttagggcctaatggaact
attgtagtaattcatgtggattacttcagtctatttatcccctggtcattccctatgggt
aataagcatctctctgatggccatgttactctgaatagtgctttgtctatacagaatgaa
atggatagagactgtcctgaatcatgtactaggaaaatttgtgtttgtcaagagttgcct
tctgaaaaaatcagtgacgagagtgtactttttccgcctttgactaaaaaatcctactgt
ccagttgaaagtggaagccaaccacctcttattacctccgataactcaaatcacctttta
aaaatgactgaagtagctgaaagtatctgtggtcctctgcctttctatcatccagaagct
cttttgatgaacatttattcagggaactggaaacgtgcaaatgtggctgtatcccatctt
attgaatgtttggcctcaaattcagcatctgagcaaaggcctgcaaagtctagtactagc
gttagccaggtcaatctgtcaaattattttgaaggacaggtgttaagcggcagaactagc
caagtttttcagtggagcagagacccaagtacaaccacttggtcttcaaattcagaaagt
gggctgatgcagttttcagctggtgacatgaccaacatgtttacagcgtctttgtcaagc
tctaagtcttctggttttcaggagatattggagaaattgcgggcacacgaagttttgaca
gattcacagaagctgaaaatgtttgcgattgttgaccttctacgtgagatgaacaattca
caatctgcctctgcttttgaaagccttgatgaacctggaagaaggttttggtgtgcgata
aggcttcaacaactggaattccacataagagacggtacaaaaccatccgtagaagagtta
gttgttgactctcaacttataggttgggcttttcagtctgattgccacatgaacttgttt
gataccatcataccaactgaaccaacctgggcagagatgcgaaagattggtattggcttt
tggtttgcgaatcttacagatcttcgtactaagatggagaagctagctagatgccaatat
ctgaaaaagagagacccaaaggactgtgctttgctatatatagcattaaatagacaccag
gtcttggctggcctctttaagatcagcaaggatgagaaagacaagcccttggttgcattt
ttgtctcgcaatttccaggaggagaaaaataaagctgctgcgtcaaaaaatgcttatgta
ttaatgggaaggcatcaatttgagttagcaattgctttctttttgcttagtggtgatatt
atatctgcagttactgtctgtgcaaagaatcttggtgatggccagcttgctcttgtaatt
tgtcgtcttgttgaaggacaaagtgggccatcagagcgccatctaatttcaaaaatttta
cttccgtctgcggttgagaaagaagattattggcttgcaagtgttcttgagtggatgtta
gggaatttcttccagtctgttctgactgttattggtttgcaagggtactctaatggcact
aaaccagaaaagtcaaagcatcctgctttgcttgaccctagcatcggtcaatattgtcta
ctactggctaccaaaaatagcttgagaaatgcacttggggagctgaatactgctgttcta
agtcagtgggcaatggcgatgactgcttctgccttaaaaaaatgtggccttcctcttgaa
gcattggagtacctgtctacatctgctagtaatattacagttccagatgatggaactgta
catgaaaaatacgatattctacctagaatatttcggccgtctccagatgattcttctaga
tggctgtctaatggggtatccaactatttggcgtaccagagcaagttagatctagccatg
gtgtacattgctaaattaattagggagcatccagggtggtgtggcacctgtttagcctca
actgatgcaaggacctgctccttggaggataagatgaatcaacttggtgatcttgaaagc
ttcgaacgaaagctggattcttctcttgcctatcttgagcagaagtttaatttattgcgg
aatgcactacttgataaggtttttgtttttttggacagtagtaggcaactgcatattgga
tatcgtctactacaaggctcttcttctcaagttcatctgccctcacttacccatgtcatt
agttgctcgtctcagttgttcaaccatcttgtaaaggatgctgaaaatttgtcttattca
ctgtctagatttgttactgctggcagtatggctagtttacacttactggcttcaccgaag
aacttccagtttgtggagttttactcgaagggttttatgtcatcaatgcgcagcctaaca
tcggctttaatgatgctttgtaaaggtgaaagtgaagatctaattcggcagttgatcatg
gctcttgatttctgtcagtattgtttgtatttcacttcagcaattcttcagcgtaatgac
aaagctcttgacgcacttttgcaaccaatgttggcctcgtgttccaatggaatcaacagg
gaagttgacatgccaaatttgaaagcaatacttggtgaggtaatggaggcactcaatccc
aagtcatcaagtgttagcacagccaataaactggttaatcaaggggtattgcatggcgat
gggggagataaaatgataaagatcccagaagatgagagattcatgattcttggagcatct
ctgtggaaacatctgtccaagttcattaaatgccaacttggtaatcttacttctaaccca
atgaccgacatgacccaggcttctagtgtatgtactgagcctgaggataatgatttcctg
gaacttgtcagacgggtcatgatgatctttactgatgtgatggaaaacaccatcacacac
atatcctttcacactgcaatgcagctcgctgttttcttctggcataagacaaggggtggg
aactcaataggtactctaatgtggctggaggaatttagtcaatctaagctaggagttttt
gctgagcaatcgggtgaaaattctggttactctaatgctacggatgaaaatactgtattg
tcaagcactgaaatgctggcaaaattcttcaatgatcctaaaacaatatctgaattgctt
gctcaattaccaattaagttatcagaactaattcacttgaatcctgctagagggtggaat
cactttcacacgggggctcttcaaaatcatgaaaagctggaaagttacaaacaagaaggt
atttttgataacagtcctcgtggtggtggtggtggtggagataaaggtccttcagtttct
gagcaaagtcgttacccattggattctgatgtaaagggagcagctcttactgatgaagtt
gctcctttccgcactcctagagaaattcatcgaagaaatggagagttattggaggcacta
tgtattaattctattgagcaacagcgggctgcagttgccagcaacaaaaagggaatagtt
tactttgatttgggtgatggactaccttcaaaagcttcatcagactttgtttgggaagaa
gctgattggcccaagaaaggctgggctggtacgaaatctactccggttcccactcgtgtt
gctcctggggttgggcttgggagtagcaaaggttcacaccttggattaggtggagctata
gtaggtgatggctctcaagcaagactaggaaaggagttgactggcggtggagcatttgga
attccagattatgctggcattggcgccactggcatgggctggggaatccaagatgacttt
gacaaatccattgacccgccagctacgctggataacataagtgtaagggctttggctagt
catccttcacggccttactttcttgctggttccagtaacactcacatctacctatgggag
tttggtgaagagaaagccgttgcaacgtacggggtgcttcctgctgctaatgttactccc
ccatatgctcttgcgtcagttacagctttgcagtttgactgctctggccacagatttgcc
gactgtgcatcagatggaacggtatgcacatggcaactagaggtgggaggaagaagcaat
gtcagacccactgattcatctctctgctttaatggccatgcctcggatatttgctatgtt
gcaactagcggttcaattatagcttcagctggctatagctccaatggtgtaaatgtagtc
atatgggacacgcttgctcccccaactagctcccgagcttcggtgatgtgccatgaaggt
ggtgcctgttcaatttctgtttttgacaatgatgtgggaaccggatctatctccccactg
attgttactggtggaaaaggtggtgatgttggacttcacgatttccggtacatagctacc
ggaaagaccaaacgacacaagcattccaacactcttgagagggacgctgacaccgctgca
atagatgtgcaactttcatccaacgccggagatcaaaatcggcatggaatgctatggtat
ataccaaaggctcattcagggagcgttacgaagatttcaacaattccgaataccagcttc
ttcttaactggaggcagggatggagatgttaaattgtgggatgcgaagagagcacgctta
gtccaccattggccgaaacttcacgagcggcatacctttctccagcgcagctcccacagc
tttggtggagtcacaagggttggtctcacagatattcaagttatctctgatggttttctt
acttgtggaggggatggctctgtaaagttggtccaactcaataacatcgctttttaa
DBGET
integrated database retrieval system
