Silene latifolia (white campion): 141604988
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Entry
141604988 CDS
T11116
Name
(RefSeq) protein SUPPRESSOR OF PHYA-105 1-like
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
slaf Silene latifolia (white campion)
Pathway
slaf04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
141604988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141604988
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
141604988
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
EIF3I
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Pkinase
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WD40_like
PK_Tyr_Ser-Thr
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
141604988
NCBI-ProteinID:
XP_074279701
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Position
10:9302935..9312396
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AA seq
1003 aa
AA seq
DB search
MKTDGSNLPLKQDGRPVFNPPGDYESMVERLKGTQGSNSVDHYGLSLSGLEPRSSSPQSS
ERPASLMRELRVEKYKDPVLDMTEIPNDKDISRRGLWPHLYQLSGGIKFKGGAADPLLRA
KDKLMGSVKETSRKEDVNSWHFRQLKSNHTDERGRVCIDAMDGNIPNSESALLPQDARMK
ILSKSSFSQFFGKKTPKGKGVMHGDVEDKTQHDNGGTCQSDGKSSSFVGMGPDVQVKLLQ
RRSVVELNLNCDGINLREWLKLGNFMKYKVERLQVFCQIAELVSLAHSQGIVLQHLRPSF
FILTPSNQLKYIGSSSRTDVDIPVPLARGKKRPPEEDIKALRNFNVKQPKLVTDVKFQNP
SPTTSIGGSRSLTFQDTNHDIGCSYSSDNTENRVLSMSSCQTTVLEKSLVSNLQLEEKWY
ACPECPDGNVTKPSSNIYSLGVLLFELLCSSDSLAHSAAMFDMHHRILPPFILSESPKEA
GFCLWLIHPDPSSRPTIREILLSDLFQGFRESQSTDNSTVTGNDDEMGESEILLDFIVSS
KEKKEAHAVKLIQDIRCIEADIKGLEAKTSSSPSQAHAKRDSSLQGFIKTVSRSGRNEAR
LITEMSQLEKAYFSMRSQTTTTTADGRGDKDLLKNRESSSQVQTQSELVGLKQKSANGLD
SFFEGLCKFTCFSKFELRGTLRNGDLLNSPNVICSLSFDRDEEYIAVAGASKTIKIFEFA
SLLNDSINIHYPVIEVGNKSKLSCVSWNSYIKNYMASTDYDGVVQVWDASTGVGFSQHME
HQKRAWSVDFSRIDPTKFATGSDDCSVKLWCTNEKRSTSTIWSPANVCCVQYSPYSSHLL
AFGSADHKIYGYDLRYTRNPWCTLAGHEKTVSYVKFVDSETLVSASTDNTLKLWDLSKTN
MSGISADACRLTFTGHSNKKHFVGLSAQDGYIACGSESNEVFTYYRSLPMPITSYKFSPV
GPISQHDAGDDSGQFVSSVCWRSKSNMVLAANSGGSIRLLQMV
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgaagacggatggttcgaatttgccattgaagcaggatggtcgccctgtgtttaatccg
ccaggtgattacgaatcaatggtagaaagattaaagggaactcaagggagtaatagtgtg
gaccattatggattatccctatcaggacttgagccacggtcctcaagccctcagtcatct
gagcgaccagcttcactcatgagagaattacgggttgaaaaatacaaggaccctgtcttg
gatatgactgaaattccaaatgataaagatatttcgaggaggggactctggccccactta
tatcagctgtcaggtggtattaagttcaaaggtggtgctgcagatccacttttaagagca
aaggataagctcatgggtagtgttaaagagacttctcgaaaggaggatgtcaactcatgg
cactttcggcaattgaagagcaaccatactgatgaacgaggcagagtatgcatagatgct
atggatggaaatattcccaattctgagagtgcattgctccctcaagatgctaggatgaag
attttatccaagtcaagtttttctcaattttttgggaagaaaacaccaaagggtaaaggt
gttatgcatggtgatgtagaggataagactcaacatgacaatggtggtacttgtcaaagt
gatgggaagtcgtcttcttttgtaggcatgggtcctgatgttcaagtgaaacttttgcaa
cgtcgcagtgttgttgaattaaatcttaattgtgatggaattaacttgagagaatggctt
aaacttgggaatttcatgaagtacaaagttgagcgccttcaagttttctgccaaattgca
gagttggttagtttggctcactctcaaggaattgtcctgcaacatttgcggccatcattc
tttattctaacaccttcaaatcagttaaagtatattgggtcgtcatccaggacagatgtg
gatattcctgtgcctctggctaggggtaagaagaggccgccagaagaagacatcaaagct
ttacgcaattttaacgtgaagcaaccgaaactcgtcacagacgtgaagtttcagaatcca
tctccaaccacctcgattggggggtctaggtctctcacatttcaagatactaatcatgat
atcggttgttcatatagctctgataatactgagaatagggttttaagtatgtctagctgt
caaactacggtcttggagaagtctcttgtttcaaaccttcagctcgaagaaaagtggtat
gcttgtccagagtgccctgatggaaatgttaccaaaccttcgtcgaatatttatagtctc
ggggtgctactttttgagctgctctgctcgtctgattcattggctcattctgctgcaatg
tttgacatgcatcatcgaatactaccaccgtttattttgtctgaaagccctaaagaagct
gggttctgtctgtggcttatacatcctgatccatcatcacgtccaacgataagggaaatc
ttgctatctgatctgttccaaggatttcgagagtcgcaatcgactgacaactcaacagta
actgggaatgatgacgaaatgggagagtcggaaatcctgcttgattttatagtttcttca
aaagagaagaaggaggctcatgcagtgaagttaattcaagacattagatgcatagaggct
gacataaaaggactagaggcaaagacttcttcctctccatctcaagctcatgcaaaaagg
gacagcagtcttcaaggatttataaagacggtttctcggtcgggtaggaatgaggctaga
ttaataacagaaatgtctcagcttgaaaaggcttacttttcaatgcgatcccaaactact
acaacaactgccgatggccggggtgataaagatttgctgaaaaacagagaaagctcatct
caggtacaaactcaaagtgaattggtcggcttgaaacagaagtctgctaatgggctggat
tcgttctttgaaggtttatgtaaatttacttgctttagtaaatttgagttacgtggaact
ctgaggaatggtgatctactgaattctcccaatgttatatgttccctgagctttgatcgt
gatgaagaatacattgcagttgccggagcatcgaaaactatcaaaatatttgagtttgct
tcccttctaaatgacagtataaatatccactatcctgtgattgaggtgggaaataaatcc
aagcttagctgtgtctcctggaacagctacatcaagaactatatggcttcaactgattac
gatggtgtcgtccaggtgtgggatgcgagtactggtgttggattttctcagcatatggaa
caccagaagagggcttggtcagttgacttctctcgaattgaccctaccaagtttgccact
ggaagtgatgattgttctgtgaaactctggtgcactaatgaaaaaaggtcaactagtaca
atctggagtccggccaatgtttgctgcgtgcagtattctccttactcttctcatcttttg
gcatttgggtcagctgatcacaaaatatatggctatgatcttcggtacactagaaaccct
tggtgtacattagctggtcatgagaagacagtcagttacgtcaaattcgtagattcggaa
acacttgtttctgcctcaacagacaatactttaaagctttgggatctcagtaaaacaaac
atgtctggaatatccgcagatgcttgccgtctaacctttaccggtcactcaaataagaag
cattttgtcggcttgtctgctcaggatggatacatagcatgcggttcagaaagcaatgag
gtttttacgtactatagatctctgccaatgccaatcacctcttacaaatttagtcctgtt
ggtcctatttctcagcatgatgctggagatgacagtggacagtttgtctctagtgtttgt
tggagaagcaagtcaaacatggttcttgcagctaactcaggtggaagcataaggttgttg
cagatggtttaa
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